Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / jalview / renderer / AnnotationRendererFactory.java

diff --git a/src/jalview/renderer/AnnotationRendererFactory.java b/src/jalview/renderer/AnnotationRendererFactory.java
index 92ea677..dd9e6e2 100644 (file)
--- a/src/jalview/renderer/AnnotationRendererFactory.java
+++ b/src/jalview/renderer/AnnotationRendererFactory.java
@@ -1,13 +1,33 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.renderer;
 
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.renderer.api.AnnotationRendererFactoryI;
 import jalview.renderer.api.AnnotationRowRendererI;
+import jalview.ws.datamodel.alphafold.PAEContactMatrix;
 
 import java.util.IdentityHashMap;
 
-public class AnnotationRendererFactory implements
-        AnnotationRendererFactoryI
+public class AnnotationRendererFactory implements AnnotationRendererFactoryI
 {
 
   private static AnnotationRendererFactoryI factory = null;
@@ -33,7 +53,15 @@ public class AnnotationRendererFactory implements
   {
     if (row.graph == AlignmentAnnotation.CONTACT_MAP)
     {
-      return new ContactMapRenderer();
+      // TODO consider configuring renderer/etc according to the type of matrix
+      // bound to the annotation row - needs to be looked up in that case
+      if (PAEContactMatrix.PAEMATRIX.equals(row.getCalcId()))
+      {
+        return ContactMapRenderer.newPAERenderer();
+      }
+      // TODO add potential for configuring renderer directly from the
+      // annotation row and/or viewmodel
+
     }
     return null;
   }