import jalview.api.AlignmentColsCollectionI;
import jalview.api.AlignmentRowsCollectionI;
+import jalview.api.RendererListenerI;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceI;
import java.awt.Color;
import java.awt.Graphics;
import java.awt.image.BufferedImage;
+import java.beans.PropertyChangeSupport;
public class OverviewRenderer
{
+ public static final String UPDATE = "OverviewUpdate";
+
+ private static final int MAX_PROGRESS = 100;
+
+ private PropertyChangeSupport changeSupport = new PropertyChangeSupport(
+ this);
+
private FeatureColourFinder finder;
private jalview.api.SequenceRenderer sr;
// raw number of pixels to allocate to each row
private float pixelsPerSeq;
+ // height in pixels of graph
+ private int graphHeight;
+
// flag to indicate whether to halt drawing
- private boolean redraw = false;
+ private volatile boolean redraw = false;
public OverviewRenderer(jalview.api.SequenceRenderer seqRenderer,
FeatureRenderer fr, OverviewDimensions od)
pixelsPerCol = od.getPixelsPerCol();
pixelsPerSeq = od.getPixelsPerSeq();
+ graphHeight = od.getGraphHeight();
miniMe = new BufferedImage(od.getWidth(), od.getHeight(),
BufferedImage.TYPE_INT_RGB);
}
int rgbcolor = Color.white.getRGB();
int seqIndex = 0;
int pixelRow = 0;
+ int alignmentHeight = miniMe.getHeight() - graphHeight;
+ int totalPixels = miniMe.getWidth() * alignmentHeight;
+
+ int lastRowUpdate = 0;
+ changeSupport.firePropertyChange(UPDATE, -1, 0);
for (int alignmentRow : rows)
{
}
}
+ sendProgressUpdate((pixelCol + 1) * (endRow - pixelRow),
+ totalPixels, lastRowUpdate);
pixelCol = endCol + 1;
}
colIndex++;
}
- pixelRow = endRow + 1;
+
+ if (pixelRow != endRow + 1)
+ {
+ lastRowUpdate = sendProgressUpdate(endRow + 1, alignmentHeight, 0);
+ pixelRow = endRow + 1;
+ }
seqIndex++;
}
+
+ // final update to progress bar if present
+ if (redraw)
+ {
+ sendProgressUpdate(pixelRow - 1, alignmentHeight, 0);
+ }
+ else
+ {
+ sendProgressUpdate(alignmentHeight, miniMe.getHeight(), 0);
+ }
return miniMe;
}
/*
+ * Calculate progress update value and fire event
+ */
+ private int sendProgressUpdate(int position, int maximum, int offset)
+ {
+ int newUpdate = offset
+ + Math.round(MAX_PROGRESS * ((float) position / maximum));
+ if (newUpdate > offset)
+ {
+ changeSupport.firePropertyChange(UPDATE, offset, newUpdate);
+ return newUpdate;
+ }
+ return offset;
+ }
+
+ /*
* Find the colour of a sequence at a specified column position
*/
private int getColumnColourFromSequence(jalview.datamodel.SequenceI seq,
{
if (redraw)
{
+ changeSupport.firePropertyChange(UPDATE, MAX_PROGRESS - 1, 0);
break;
}
+
if (alignmentCol >= annotations.length)
{
break; // no more annotations to draw here
g.fillRect(pixelCol, y - height, endCol - pixelCol + 1, height);
}
+
pixelCol = endCol + 1;
colIndex++;
}
}
+ changeSupport.firePropertyChange(UPDATE, MAX_PROGRESS - 1,
+ MAX_PROGRESS);
}
public void setRedraw(boolean b)
redraw = b;
}
}
+
+ public void addPropertyChangeListener(RendererListenerI listener)
+ {
+ changeSupport.addPropertyChangeListener(listener);
+ }
+
+ public void removePropertyChangeListener(RendererListenerI listener)
+ {
+ changeSupport.removePropertyChangeListener(listener);
+ }
}