* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
+ * modify it under the terms of the GNU General License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
+ * PURPOSE. See the GNU General License for more details.
*
- * You should have received a copy of the GNU General Public License
+ * You should have received a copy of the GNU General License
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
public interface ResidueShaderI
{
+ void setConsensus(ProfilesI cons);
- public abstract void setConsensus(ProfilesI cons);
+ boolean conservationApplied();
- public abstract void setInformation(ProfilesI info);
+ void setConservationApplied(boolean conservationApplied);
- public abstract boolean conservationApplied();
+ void setConservation(Conservation cons);
- public abstract void setConservationApplied(boolean conservationApplied);
-
- public abstract void setConservation(Conservation cons);
-
- public abstract void alignmentChanged(AnnotatedCollectionI alignment,
+ void alignmentChanged(AnnotatedCollectionI alignment,
Map<SequenceI, SequenceCollectionI> hiddenReps);
/**
* @param consensusThreshold
* @param ignoreGaps
*/
- public abstract void setThreshold(int consensusThreshold,
+ void setThreshold(int consensusThreshold,
boolean ignoreGaps);
- public abstract void setConservationInc(int i);
+ void setConservationInc(int i);
- public abstract int getConservationInc();
+ int getConservationInc();
/**
* Get the percentage threshold for this colour scheme
*
* @return Returns the percentage threshold
*/
- public abstract int getThreshold();
+ int getThreshold();
/**
* Returns the possibly context dependent colour for the given symbol at the
* @param seq
* @return
*/
- public abstract Color findColour(char symbol, int position,
+ Color findColour(char symbol, int position,
SequenceI seq);
- public abstract ColourSchemeI getColourScheme();
+ ColourSchemeI getColourScheme();
- public abstract void setColourScheme(ColourSchemeI cs);
+ void setColourScheme(ColourSchemeI cs);
}
\ No newline at end of file