*/
package jalview.renderer.seqfeatures;
+import jalview.api.AlignViewportI;
import jalview.api.FeatureRenderer;
import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.SequenceI;
* @param defaultColour
* @param seq
* @param column
- * alignment column position (base zero)
+ * alignment column position (0..)
* @return
*/
public Color findFeatureColour(Color defaultColour, SequenceI seq,
}
}
- Color c = featureRenderer.findFeatureColour(seq, column, g);
+ Color c = featureRenderer.findFeatureColour(seq, column + 1, g);
if (c == null)
{
return defaultColour;
*/
boolean noFeaturesDisplayed()
{
- if (featureRenderer == null
- || !featureRenderer.getViewport().isShowSequenceFeatures())
+ AlignViewportI av = featureRenderer.getViewport();
+ if (av.isShowComplementFeatures())
+ {
+ return false;
+ }
+ if (featureRenderer == null || !av.isShowSequenceFeatures())
{
return true;
}