-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
- * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
- * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
- */\r
-package jalview.schemabinding.version2;\r
-\r
-// ---------------------------------/\r
-// - Imported classes and packages -/\r
-// ---------------------------------/\r
-\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-\r
-/**\r
- * Class AlcodMap.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AlcodMap implements java.io.Serializable\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * internal jalview id for the dnasq for this mapping.\r
- * \r
- */\r
- private java.lang.String _dnasq;\r
-\r
- /**\r
- * a Mapping entry and an associated protein sequence\r
- * \r
- */\r
- private jalview.schemabinding.version2.Mapping _mapping;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public AlcodMap()\r
- {\r
- super();\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- * Returns the value of field 'dnasq'. The field 'dnasq' has the following\r
- * description: internal jalview id for the dnasq for this mapping.\r
- * \r
- * \r
- * @return the value of field 'Dnasq'.\r
- */\r
- public java.lang.String getDnasq()\r
- {\r
- return this._dnasq;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'mapping'. The field 'mapping' has the following\r
- * description: a Mapping entry and an associated protein sequence\r
- * \r
- * \r
- * @return the value of field 'Mapping'.\r
- */\r
- public jalview.schemabinding.version2.Mapping getMapping()\r
- {\r
- return this._mapping;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid()\r
- {\r
- try\r
- {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex)\r
- {\r
- return false;\r
- }\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- */\r
- public void marshal(final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException\r
- * if an IOException occurs during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- */\r
- public void marshal(final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException,\r
- org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'dnasq'. The field 'dnasq' has the following\r
- * description: internal jalview id for the dnasq for this mapping.\r
- * \r
- * \r
- * @param dnasq\r
- * the value of field 'dnasq'.\r
- */\r
- public void setDnasq(final java.lang.String dnasq)\r
- {\r
- this._dnasq = dnasq;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'mapping'. The field 'mapping' has the following\r
- * description: a Mapping entry and an associated protein sequence\r
- * \r
- * \r
- * @param mapping\r
- * the value of field 'mapping'.\r
- */\r
- public void setMapping(\r
- final jalview.schemabinding.version2.Mapping mapping)\r
- {\r
- this._mapping = mapping;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- * @return the unmarshaled jalview.schemabinding.version2.AlcodMap\r
- */\r
- public static jalview.schemabinding.version2.AlcodMap unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException,\r
- org.exolab.castor.xml.ValidationException\r
- {\r
- return (jalview.schemabinding.version2.AlcodMap) Unmarshaller\r
- .unmarshal(jalview.schemabinding.version2.AlcodMap.class,\r
- reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
- */\r
- public void validate() throws org.exolab.castor.xml.ValidationException\r
- {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
-\r
-}\r
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class AlcodMap.
+ *
+ * @version $Revision$ $Date$
+ */
+public class AlcodMap implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * internal jalview id for the dnasq for this mapping.
+ *
+ */
+ private java.lang.String _dnasq;
+
+ /**
+ * a Mapping entry and an associated protein sequence
+ *
+ */
+ private jalview.schemabinding.version2.Mapping _mapping;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public AlcodMap()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ * Returns the value of field 'dnasq'. The field 'dnasq' has the following
+ * description: internal jalview id for the dnasq for this mapping.
+ *
+ *
+ * @return the value of field 'Dnasq'.
+ */
+ public java.lang.String getDnasq()
+ {
+ return this._dnasq;
+ }
+
+ /**
+ * Returns the value of field 'mapping'. The field 'mapping' has the following
+ * description: a Mapping entry and an associated protein sequence
+ *
+ *
+ * @return the value of field 'Mapping'.
+ */
+ public jalview.schemabinding.version2.Mapping getMapping()
+ {
+ return this._mapping;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'dnasq'. The field 'dnasq' has the following
+ * description: internal jalview id for the dnasq for this mapping.
+ *
+ *
+ * @param dnasq
+ * the value of field 'dnasq'.
+ */
+ public void setDnasq(final java.lang.String dnasq)
+ {
+ this._dnasq = dnasq;
+ }
+
+ /**
+ * Sets the value of field 'mapping'. The field 'mapping' has the following
+ * description: a Mapping entry and an associated protein sequence
+ *
+ *
+ * @param mapping
+ * the value of field 'mapping'.
+ */
+ public void setMapping(
+ final jalview.schemabinding.version2.Mapping mapping)
+ {
+ this._mapping = mapping;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.AlcodMap
+ */
+ public static jalview.schemabinding.version2.AlcodMap unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.AlcodMap) Unmarshaller
+ .unmarshal(jalview.schemabinding.version2.AlcodMap.class,
+ reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}