AlignmentAnnotations require id

[jalview.git] / src / jalview / schemabinding / version2 / Annotation.java

diff --git a/src/jalview/schemabinding/version2/Annotation.java b/src/jalview/schemabinding/version2/Annotation.java
index 6003b86..61f9413 100755 (executable)
--- a/src/jalview/schemabinding/version2/Annotation.java
+++ b/src/jalview/schemabinding/version2/Annotation.java
@@ -56,6 +56,36 @@ public class Annotation implements java.io.Serializable {
     private boolean _has_graphType;\r
 \r
     /**\r
+     * Field _sequenceRef\r
+     */\r
+    private java.lang.String _sequenceRef;\r
+\r
+    /**\r
+     * Field _graphColour\r
+     */\r
+    private int _graphColour;\r
+\r
+    /**\r
+     * keeps track of state for field: _graphColour\r
+     */\r
+    private boolean _has_graphColour;\r
+\r
+    /**\r
+     * Field _graphGroup\r
+     */\r
+    private int _graphGroup;\r
+\r
+    /**\r
+     * keeps track of state for field: _graphGroup\r
+     */\r
+    private boolean _has_graphGroup;\r
+\r
+    /**\r
+     * Field _id\r
+     */\r
+    private java.lang.String _id;\r
+\r
+    /**\r
      * Field _annotationElementList\r
      */\r
     private java.util.Vector _annotationElementList;\r
@@ -127,6 +157,24 @@ public class Annotation implements java.io.Serializable {
     } //-- void deleteGraph() \r
 \r
     /**\r
+     * Method deleteGraphColour\r
+     * \r
+     */\r
+    public void deleteGraphColour()\r
+    {\r
+        this._has_graphColour= false;\r
+    } //-- void deleteGraphColour() \r
+\r
+    /**\r
+     * Method deleteGraphGroup\r
+     * \r
+     */\r
+    public void deleteGraphGroup()\r
+    {\r
+        this._has_graphGroup= false;\r
+    } //-- void deleteGraphGroup() \r
+\r
+    /**\r
      * Method deleteGraphType\r
      * \r
      */\r
@@ -218,6 +266,28 @@ public class Annotation implements java.io.Serializable {
     } //-- boolean getGraph() \r
 \r
     /**\r
+     * Returns the value of field 'graphColour'.\r
+     * \r
+     * @return int\r
+     * @return the value of field 'graphColour'.\r
+     */\r
+    public int getGraphColour()\r
+    {\r
+        return this._graphColour;\r
+    } //-- int getGraphColour() \r
+\r
+    /**\r
+     * Returns the value of field 'graphGroup'.\r
+     * \r
+     * @return int\r
+     * @return the value of field 'graphGroup'.\r
+     */\r
+    public int getGraphGroup()\r
+    {\r
+        return this._graphGroup;\r
+    } //-- int getGraphGroup() \r
+\r
+    /**\r
      * Returns the value of field 'graphType'.\r
      * \r
      * @return int\r
@@ -229,6 +299,17 @@ public class Annotation implements java.io.Serializable {
     } //-- int getGraphType() \r
 \r
     /**\r
+     * Returns the value of field 'id'.\r
+     * \r
+     * @return String\r
+     * @return the value of field 'id'.\r
+     */\r
+    public java.lang.String getId()\r
+    {\r
+        return this._id;\r
+    } //-- java.lang.String getId() \r
+\r
+    /**\r
      * Returns the value of field 'label'.\r
      * \r
      * @return String\r
@@ -240,6 +321,17 @@ public class Annotation implements java.io.Serializable {
     } //-- java.lang.String getLabel() \r
 \r
     /**\r
+     * Returns the value of field 'sequenceRef'.\r
+     * \r
+     * @return String\r
+     * @return the value of field 'sequenceRef'.\r
+     */\r
+    public java.lang.String getSequenceRef()\r
+    {\r
+        return this._sequenceRef;\r
+    } //-- java.lang.String getSequenceRef() \r
+\r
+    /**\r
      * Returns the value of field 'thresholdLine'.\r
      * \r
      * @return ThresholdLine\r
@@ -263,6 +355,30 @@ public class Annotation implements java.io.Serializable {
     } //-- boolean hasGraph() \r
 \r
     /**\r
+     * Method hasGraphColour\r
+     * \r
+     * \r
+     * \r
+     * @return boolean\r
+     */\r
+    public boolean hasGraphColour()\r
+    {\r
+        return this._has_graphColour;\r
+    } //-- boolean hasGraphColour() \r
+\r
+    /**\r
+     * Method hasGraphGroup\r
+     * \r
+     * \r
+     * \r
+     * @return boolean\r
+     */\r
+    public boolean hasGraphGroup()\r
+    {\r
+        return this._has_graphGroup;\r
+    } //-- boolean hasGraphGroup() \r
+\r
+    /**\r
      * Method hasGraphType\r
      * \r
      * \r
@@ -400,6 +516,28 @@ public class Annotation implements java.io.Serializable {
     } //-- void setGraph(boolean) \r
 \r
     /**\r
+     * Sets the value of field 'graphColour'.\r
+     * \r
+     * @param graphColour the value of field 'graphColour'.\r
+     */\r
+    public void setGraphColour(int graphColour)\r
+    {\r
+        this._graphColour = graphColour;\r
+        this._has_graphColour = true;\r
+    } //-- void setGraphColour(int) \r
+\r
+    /**\r
+     * Sets the value of field 'graphGroup'.\r
+     * \r
+     * @param graphGroup the value of field 'graphGroup'.\r
+     */\r
+    public void setGraphGroup(int graphGroup)\r
+    {\r
+        this._graphGroup = graphGroup;\r
+        this._has_graphGroup = true;\r
+    } //-- void setGraphGroup(int) \r
+\r
+    /**\r
      * Sets the value of field 'graphType'.\r
      * \r
      * @param graphType the value of field 'graphType'.\r
@@ -411,6 +549,16 @@ public class Annotation implements java.io.Serializable {
     } //-- void setGraphType(int) \r
 \r
     /**\r
+     * Sets the value of field 'id'.\r
+     * \r
+     * @param id the value of field 'id'.\r
+     */\r
+    public void setId(java.lang.String id)\r
+    {\r
+        this._id = id;\r
+    } //-- void setId(java.lang.String) \r
+\r
+    /**\r
      * Sets the value of field 'label'.\r
      * \r
      * @param label the value of field 'label'.\r
@@ -421,6 +569,16 @@ public class Annotation implements java.io.Serializable {
     } //-- void setLabel(java.lang.String) \r
 \r
     /**\r
+     * Sets the value of field 'sequenceRef'.\r
+     * \r
+     * @param sequenceRef the value of field 'sequenceRef'.\r
+     */\r
+    public void setSequenceRef(java.lang.String sequenceRef)\r
+    {\r
+        this._sequenceRef = sequenceRef;\r
+    } //-- void setSequenceRef(java.lang.String) \r
+\r
+    /**\r
      * Sets the value of field 'thresholdLine'.\r
      * \r
      * @param thresholdLine the value of field 'thresholdLine'.\r