-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
/*
* This class was automatically generated with
* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
*
* @version $Revision$ $Date$
*/
-public class AnnotationColours implements java.io.Serializable {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field _aboveThreshold.
- */
- private int _aboveThreshold;
-
- /**
- * keeps track of state for field: _aboveThreshold
- */
- private boolean _has_aboveThreshold;
-
- /**
- * Field _annotation.
- */
- private java.lang.String _annotation;
-
- /**
- * Field _minColour.
- */
- private int _minColour;
-
- /**
- * keeps track of state for field: _minColour
- */
- private boolean _has_minColour;
-
- /**
- * Field _maxColour.
- */
- private int _maxColour;
-
- /**
- * keeps track of state for field: _maxColour
- */
- private boolean _has_maxColour;
-
- /**
- * Field _colourScheme.
- */
- private java.lang.String _colourScheme;
-
- /**
- * Field _threshold.
- */
- private float _threshold;
-
- /**
- * keeps track of state for field: _threshold
- */
- private boolean _has_threshold;
+public class AnnotationColours extends AnnotationColourScheme
+implements java.io.Serializable
+{
//----------------/
//-----------/
/**
- */
- public void deleteAboveThreshold(
- ) {
- this._has_aboveThreshold= false;
- }
-
- /**
- */
- public void deleteMaxColour(
- ) {
- this._has_maxColour= false;
- }
-
- /**
- */
- public void deleteMinColour(
- ) {
- this._has_minColour= false;
- }
-
- /**
- */
- public void deleteThreshold(
- ) {
- this._has_threshold= false;
- }
-
- /**
- * Returns the value of field 'aboveThreshold'.
- *
- * @return the value of field 'AboveThreshold'.
- */
- public int getAboveThreshold(
- ) {
- return this._aboveThreshold;
- }
-
- /**
- * Returns the value of field 'annotation'.
- *
- * @return the value of field 'Annotation'.
- */
- public java.lang.String getAnnotation(
- ) {
- return this._annotation;
- }
-
- /**
- * Returns the value of field 'colourScheme'.
- *
- * @return the value of field 'ColourScheme'.
- */
- public java.lang.String getColourScheme(
- ) {
- return this._colourScheme;
- }
-
- /**
- * Returns the value of field 'maxColour'.
- *
- * @return the value of field 'MaxColour'.
- */
- public int getMaxColour(
- ) {
- return this._maxColour;
- }
-
- /**
- * Returns the value of field 'minColour'.
- *
- * @return the value of field 'MinColour'.
- */
- public int getMinColour(
- ) {
- return this._minColour;
- }
-
- /**
- * Returns the value of field 'threshold'.
- *
- * @return the value of field 'Threshold'.
- */
- public float getThreshold(
- ) {
- return this._threshold;
- }
-
- /**
- * Method hasAboveThreshold.
- *
- * @return true if at least one AboveThreshold has been added
- */
- public boolean hasAboveThreshold(
- ) {
- return this._has_aboveThreshold;
- }
-
- /**
- * Method hasMaxColour.
- *
- * @return true if at least one MaxColour has been added
- */
- public boolean hasMaxColour(
- ) {
- return this._has_maxColour;
- }
-
- /**
- * Method hasMinColour.
- *
- * @return true if at least one MinColour has been added
- */
- public boolean hasMinColour(
- ) {
- return this._has_minColour;
- }
-
- /**
- * Method hasThreshold.
- *
- * @return true if at least one Threshold has been added
- */
- public boolean hasThreshold(
- ) {
- return this._has_threshold;
- }
-
- /**
* Method isValid.
*
* @return true if this object is valid according to the schema
}
/**
- * Sets the value of field 'aboveThreshold'.
- *
- * @param aboveThreshold the value of field 'aboveThreshold'.
- */
- public void setAboveThreshold(
- final int aboveThreshold) {
- this._aboveThreshold = aboveThreshold;
- this._has_aboveThreshold = true;
- }
-
- /**
- * Sets the value of field 'annotation'.
- *
- * @param annotation the value of field 'annotation'.
- */
- public void setAnnotation(
- final java.lang.String annotation) {
- this._annotation = annotation;
- }
-
- /**
- * Sets the value of field 'colourScheme'.
- *
- * @param colourScheme the value of field 'colourScheme'.
- */
- public void setColourScheme(
- final java.lang.String colourScheme) {
- this._colourScheme = colourScheme;
- }
-
- /**
- * Sets the value of field 'maxColour'.
- *
- * @param maxColour the value of field 'maxColour'.
- */
- public void setMaxColour(
- final int maxColour) {
- this._maxColour = maxColour;
- this._has_maxColour = true;
- }
-
- /**
- * Sets the value of field 'minColour'.
- *
- * @param minColour the value of field 'minColour'.
- */
- public void setMinColour(
- final int minColour) {
- this._minColour = minColour;
- this._has_minColour = true;
- }
-
- /**
- * Sets the value of field 'threshold'.
- *
- * @param threshold the value of field 'threshold'.
- */
- public void setThreshold(
- final float threshold) {
- this._threshold = threshold;
- this._has_threshold = true;
- }
-
- /**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @return the unmarshaled
- * jalview.schemabinding.version2.AnnotationColours
+ * jalview.schemabinding.version2.AnnotationColourScheme
*/
- public static jalview.schemabinding.version2.AnnotationColours unmarshal(
+ public static jalview.schemabinding.version2.AnnotationColourScheme unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- return (jalview.schemabinding.version2.AnnotationColours) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
+ return (jalview.schemabinding.version2.AnnotationColourScheme) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
}
/**
git://source.jalview.org / jalview.git / blobdiff