/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
* \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
+ * This file is part of Jalview.\r
* \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
* \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
package jalview.schemabinding.version2;\r
\r
-// ---------------------------------/\r
-// - Imported classes and packages -/\r
-// ---------------------------------/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
\r
import org.exolab.castor.xml.Marshaller;\r
import org.exolab.castor.xml.Unmarshaller;\r
*/\r
private java.lang.String _RGB;\r
\r
+ /**\r
+ * Field _minRGB.\r
+ */\r
+ private java.lang.String _minRGB;\r
+\r
+ /**\r
+ * loosely specified enumeration: NONE,ABOVE, or BELOW\r
+ */\r
+ private java.lang.String _threshType;\r
+\r
+ /**\r
+ * Field _threshold.\r
+ */\r
+ private float _threshold;\r
+\r
+ /**\r
+ * keeps track of state for field: _threshold\r
+ */\r
+ private boolean _has_threshold;\r
+\r
+ /**\r
+ * Field _max.\r
+ */\r
+ private float _max;\r
+\r
+ /**\r
+ * keeps track of state for field: _max\r
+ */\r
+ private boolean _has_max;\r
+\r
+ /**\r
+ * Field _min.\r
+ */\r
+ private float _min;\r
+\r
+ /**\r
+ * keeps track of state for field: _min\r
+ */\r
+ private boolean _has_min;\r
+\r
+ /**\r
+ * Field _colourByLabel.\r
+ */\r
+ private boolean _colourByLabel;\r
+\r
+ /**\r
+ * keeps track of state for field: _colourByLabel\r
+ */\r
+ private boolean _has_colourByLabel;\r
+\r
+ /**\r
+ * Field _autoScale.\r
+ */\r
+ private boolean _autoScale;\r
+\r
+ /**\r
+ * keeps track of state for field: _autoScale\r
+ */\r
+ private boolean _has_autoScale;\r
+\r
// ----------------/\r
// - Constructors -/\r
// ----------------/\r
// -----------/\r
\r
/**\r
+ */\r
+ public void deleteAutoScale()\r
+ {\r
+ this._has_autoScale = false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteColourByLabel()\r
+ {\r
+ this._has_colourByLabel = false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMax()\r
+ {\r
+ this._has_max = false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMin()\r
+ {\r
+ this._has_min = false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteThreshold()\r
+ {\r
+ this._has_threshold = false;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean getAutoScale()\r
+ {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean getColourByLabel()\r
+ {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'max'.\r
+ * \r
+ * @return the value of field 'Max'.\r
+ */\r
+ public float getMax()\r
+ {\r
+ return this._max;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'min'.\r
+ * \r
+ * @return the value of field 'Min'.\r
+ */\r
+ public float getMin()\r
+ {\r
+ return this._min;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'minRGB'.\r
+ * \r
+ * @return the value of field 'MinRGB'.\r
+ */\r
+ public java.lang.String getMinRGB()\r
+ {\r
+ return this._minRGB;\r
+ }\r
+\r
+ /**\r
* Returns the value of field 'name'.\r
* \r
* @return the value of field 'Name'.\r
}\r
\r
/**\r
+ * Returns the value of field 'threshType'. The field 'threshType' has the\r
+ * following description: loosely specified enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @return the value of field 'ThreshType'.\r
+ */\r
+ public java.lang.String getThreshType()\r
+ {\r
+ return this._threshType;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'threshold'.\r
+ * \r
+ * @return the value of field 'Threshold'.\r
+ */\r
+ public float getThreshold()\r
+ {\r
+ return this._threshold;\r
+ }\r
+\r
+ /**\r
+ * Method hasAutoScale.\r
+ * \r
+ * @return true if at least one AutoScale has been added\r
+ */\r
+ public boolean hasAutoScale()\r
+ {\r
+ return this._has_autoScale;\r
+ }\r
+\r
+ /**\r
+ * Method hasColourByLabel.\r
+ * \r
+ * @return true if at least one ColourByLabel has been added\r
+ */\r
+ public boolean hasColourByLabel()\r
+ {\r
+ return this._has_colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Method hasMax.\r
+ * \r
+ * @return true if at least one Max has been added\r
+ */\r
+ public boolean hasMax()\r
+ {\r
+ return this._has_max;\r
+ }\r
+\r
+ /**\r
+ * Method hasMin.\r
+ * \r
+ * @return true if at least one Min has been added\r
+ */\r
+ public boolean hasMin()\r
+ {\r
+ return this._has_min;\r
+ }\r
+\r
+ /**\r
+ * Method hasThreshold.\r
+ * \r
+ * @return true if at least one Threshold has been added\r
+ */\r
+ public boolean hasThreshold()\r
+ {\r
+ return this._has_threshold;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean isAutoScale()\r
+ {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean isColourByLabel()\r
+ {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
* Method isValid.\r
* \r
* @return true if this object is valid according to the schema\r
* \r
* @param out\r
* @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
* @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
+ * if this object is an invalid instance according to the schema\r
*/\r
public void marshal(final java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException,\r
* \r
* @param handler\r
* @throws java.io.IOException\r
- * if an IOException occurs during marshaling\r
+ * if an IOException occurs during marshaling\r
* @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
+ * if this object is an invalid instance according to the schema\r
* @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
*/\r
public void marshal(final org.xml.sax.ContentHandler handler)\r
throws java.io.IOException,\r
}\r
\r
/**\r
+ * Sets the value of field 'autoScale'.\r
+ * \r
+ * @param autoScale\r
+ * the value of field 'autoScale'.\r
+ */\r
+ public void setAutoScale(final boolean autoScale)\r
+ {\r
+ this._autoScale = autoScale;\r
+ this._has_autoScale = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'colourByLabel'.\r
+ * \r
+ * @param colourByLabel\r
+ * the value of field 'colourByLabel'.\r
+ */\r
+ public void setColourByLabel(final boolean colourByLabel)\r
+ {\r
+ this._colourByLabel = colourByLabel;\r
+ this._has_colourByLabel = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'max'.\r
+ * \r
+ * @param max\r
+ * the value of field 'max'.\r
+ */\r
+ public void setMax(final float max)\r
+ {\r
+ this._max = max;\r
+ this._has_max = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'min'.\r
+ * \r
+ * @param min\r
+ * the value of field 'min'.\r
+ */\r
+ public void setMin(final float min)\r
+ {\r
+ this._min = min;\r
+ this._has_min = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'minRGB'.\r
+ * \r
+ * @param minRGB\r
+ * the value of field 'minRGB'.\r
+ */\r
+ public void setMinRGB(final java.lang.String minRGB)\r
+ {\r
+ this._minRGB = minRGB;\r
+ }\r
+\r
+ /**\r
* Sets the value of field 'name'.\r
* \r
* @param name\r
- * the value of field 'name'.\r
+ * the value of field 'name'.\r
*/\r
public void setName(final java.lang.String name)\r
{\r
* Sets the value of field 'RGB'.\r
* \r
* @param RGB\r
- * the value of field 'RGB'.\r
+ * the value of field 'RGB'.\r
*/\r
public void setRGB(final java.lang.String RGB)\r
{\r
}\r
\r
/**\r
+ * Sets the value of field 'threshType'. The field 'threshType' has the\r
+ * following description: loosely specified enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @param threshType\r
+ * the value of field 'threshType'.\r
+ */\r
+ public void setThreshType(final java.lang.String threshType)\r
+ {\r
+ this._threshType = threshType;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'threshold'.\r
+ * \r
+ * @param threshold\r
+ * the value of field 'threshold'.\r
+ */\r
+ public void setThreshold(final float threshold)\r
+ {\r
+ this._threshold = threshold;\r
+ this._has_threshold = true;\r
+ }\r
+\r
+ /**\r
* Method unmarshal.\r
* \r
* @param reader\r
* @throws org.exolab.castor.xml.MarshalException\r
- * if object is null or if any SAXException is thrown during\r
- * marshaling\r
+ * if object is null or if any SAXException is thrown during\r
+ * marshaling\r
* @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
+ * if this object is an invalid instance according to the schema\r
* @return the unmarshaled jalview.schemabinding.version2.Colour\r
*/\r
public static jalview.schemabinding.version2.Colour unmarshal(\r
* \r
* \r
* @throws org.exolab.castor.xml.ValidationException\r
- * if this object is an invalid instance according to the\r
- * schema\r
+ * if this object is an invalid instance according to the schema\r
*/\r
public void validate() throws org.exolab.castor.xml.ValidationException\r
{\r
git://source.jalview.org / jalview.git / blobdiff