Save links and scores and keyValues for features

[jalview.git] / src / jalview / schemabinding / version2 / FeatureDescriptor.java

diff --git a/src/jalview/schemabinding/version2/FeatureDescriptor.java b/src/jalview/schemabinding/version2/FeatureDescriptor.java
index ac172e8..d0b9372 100755 (executable)
--- a/src/jalview/schemabinding/version2/FeatureDescriptor.java
+++ b/src/jalview/schemabinding/version2/FeatureDescriptor.java
@@ -57,6 +57,9 @@ public class FeatureDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
         super();\r
         nsURI = "www.jalview.org";\r
         xmlName = "feature";\r
+        \r
+        //-- set grouping compositor\r
+        setCompositorAsSequence();\r
         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
         org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
@@ -290,8 +293,84 @@ public class FeatureDescriptor extends org.exolab.castor.xml.util.XMLClassDescri
             fieldValidator.setValidator(typeValidator);\r
         }\r
         desc.setValidator(fieldValidator);\r
+        //-- _score\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Feature target = (Feature) object;\r
+                if(!target.hasScore())\r
+                    return null;\r
+                return new java.lang.Float(target.getScore());\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Feature target = (Feature) object;\r
+                    // if null, use delete method for optional primitives \r
+                    if (value == null) {\r
+                        target.deleteScore();\r
+                        return;\r
+                    }\r
+                    target.setScore( ((java.lang.Float)value).floatValue());\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _score\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            FloatValidator typeValidator = new FloatValidator();\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
         //-- initialize element descriptors\r
         \r
+        //-- _otherDataList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.OtherData.class, "_otherDataList", "otherData", org.exolab.castor.xml.NodeType.Element);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Feature target = (Feature) object;\r
+                return target.getOtherData();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Feature target = (Feature) object;\r
+                    target.addOtherData( (jalview.schemabinding.version2.OtherData) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new jalview.schemabinding.version2.OtherData();\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.jalview.org");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _otherDataList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
     } //-- jalview.schemabinding.version2.FeatureDescriptor()\r
 \r
 \r