fix recent file type bug

[jalview.git] / src / jalview / schemabinding / version2 / Pdbids.java

diff --git a/src/jalview/schemabinding/version2/Pdbids.java b/src/jalview/schemabinding/version2/Pdbids.java
index 53b2e91..347ff35 100755 (executable)
--- a/src/jalview/schemabinding/version2/Pdbids.java
+++ b/src/jalview/schemabinding/version2/Pdbids.java
@@ -15,6 +15,8 @@ import java.io.IOException;
 import java.io.Reader;\r
 import java.io.Serializable;\r
 import java.io.Writer;\r
+import java.util.Enumeration;\r
+import java.util.Vector;\r
 import org.exolab.castor.xml.MarshalException;\r
 import org.exolab.castor.xml.Marshaller;\r
 import org.exolab.castor.xml.Unmarshaller;\r
@@ -26,17 +28,28 @@ import org.xml.sax.ContentHandler;
  * \r
  * @version $Revision$ $Date$\r
  */\r
-public class Pdbids extends Pdbentry \r
+public class Pdbids extends jalview.schemabinding.version2.Pdbentry \r
 implements java.io.Serializable\r
 {\r
 \r
 \r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field _structureStateList\r
+     */\r
+    private java.util.Vector _structureStateList;\r
+\r
+\r
       //----------------/\r
      //- Constructors -/\r
     //----------------/\r
 \r
     public Pdbids() {\r
         super();\r
+        _structureStateList = new Vector();\r
     } //-- jalview.schemabinding.version2.Pdbids()\r
 \r
 \r
@@ -45,6 +58,93 @@ implements java.io.Serializable
     //-----------/\r
 \r
     /**\r
+     * Method addStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param vStructureState\r
+     */\r
+    public void addStructureState(jalview.schemabinding.version2.StructureState vStructureState)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _structureStateList.addElement(vStructureState);\r
+    } //-- void addStructureState(jalview.schemabinding.version2.StructureState) \r
+\r
+    /**\r
+     * Method addStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vStructureState\r
+     */\r
+    public void addStructureState(int index, jalview.schemabinding.version2.StructureState vStructureState)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _structureStateList.insertElementAt(vStructureState, index);\r
+    } //-- void addStructureState(int, jalview.schemabinding.version2.StructureState) \r
+\r
+    /**\r
+     * Method enumerateStructureState\r
+     * \r
+     * \r
+     * \r
+     * @return Enumeration\r
+     */\r
+    public java.util.Enumeration enumerateStructureState()\r
+    {\r
+        return _structureStateList.elements();\r
+    } //-- java.util.Enumeration enumerateStructureState() \r
+\r
+    /**\r
+     * Method getStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return StructureState\r
+     */\r
+    public jalview.schemabinding.version2.StructureState getStructureState(int index)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _structureStateList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        \r
+        return (jalview.schemabinding.version2.StructureState) _structureStateList.elementAt(index);\r
+    } //-- jalview.schemabinding.version2.StructureState getStructureState(int) \r
+\r
+    /**\r
+     * Method getStructureState\r
+     * \r
+     * \r
+     * \r
+     * @return StructureState\r
+     */\r
+    public jalview.schemabinding.version2.StructureState[] getStructureState()\r
+    {\r
+        int size = _structureStateList.size();\r
+        jalview.schemabinding.version2.StructureState[] mArray = new jalview.schemabinding.version2.StructureState[size];\r
+        for (int index = 0; index < size; index++) {\r
+            mArray[index] = (jalview.schemabinding.version2.StructureState) _structureStateList.elementAt(index);\r
+        }\r
+        return mArray;\r
+    } //-- jalview.schemabinding.version2.StructureState[] getStructureState() \r
+\r
+    /**\r
+     * Method getStructureStateCount\r
+     * \r
+     * \r
+     * \r
+     * @return int\r
+     */\r
+    public int getStructureStateCount()\r
+    {\r
+        return _structureStateList.size();\r
+    } //-- int getStructureStateCount() \r
+\r
+    /**\r
      * Method isValid\r
      * \r
      * \r
@@ -91,6 +191,64 @@ implements java.io.Serializable
     } //-- void marshal(org.xml.sax.ContentHandler) \r
 \r
     /**\r
+     * Method removeAllStructureState\r
+     * \r
+     */\r
+    public void removeAllStructureState()\r
+    {\r
+        _structureStateList.removeAllElements();\r
+    } //-- void removeAllStructureState() \r
+\r
+    /**\r
+     * Method removeStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return StructureState\r
+     */\r
+    public jalview.schemabinding.version2.StructureState removeStructureState(int index)\r
+    {\r
+        java.lang.Object obj = _structureStateList.elementAt(index);\r
+        _structureStateList.removeElementAt(index);\r
+        return (jalview.schemabinding.version2.StructureState) obj;\r
+    } //-- jalview.schemabinding.version2.StructureState removeStructureState(int) \r
+\r
+    /**\r
+     * Method setStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vStructureState\r
+     */\r
+    public void setStructureState(int index, jalview.schemabinding.version2.StructureState vStructureState)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _structureStateList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        _structureStateList.setElementAt(vStructureState, index);\r
+    } //-- void setStructureState(int, jalview.schemabinding.version2.StructureState) \r
+\r
+    /**\r
+     * Method setStructureState\r
+     * \r
+     * \r
+     * \r
+     * @param structureStateArray\r
+     */\r
+    public void setStructureState(jalview.schemabinding.version2.StructureState[] structureStateArray)\r
+    {\r
+        //-- copy array\r
+        _structureStateList.removeAllElements();\r
+        for (int i = 0; i < structureStateArray.length; i++) {\r
+            _structureStateList.addElement(structureStateArray[i]);\r
+        }\r
+    } //-- void setStructureState(jalview.schemabinding.version2.StructureState) \r
+\r
+    /**\r
      * Method unmarshal\r
      * \r
      * \r