total annotation score is a double for maximum precision.

[jalview.git] / src / jalview / schemabinding / version2 / SequenceDescriptor.java

diff --git a/src/jalview/schemabinding/version2/SequenceDescriptor.java b/src/jalview/schemabinding/version2/SequenceDescriptor.java
index 9e1a7f3..555284a 100755 (executable)
--- a/src/jalview/schemabinding/version2/SequenceDescriptor.java
+++ b/src/jalview/schemabinding/version2/SequenceDescriptor.java
@@ -21,7 +21,7 @@ import org.exolab.castor.xml.validators.*;
  * \r
  * @version $Revision$ $Date$\r
  */\r
-public class SequenceDescriptor extends SequenceTypeDescriptor {\r
+public class SequenceDescriptor extends jalview.schemabinding.version2.SequenceTypeDescriptor {\r
 \r
 \r
       //--------------------------/\r
@@ -55,9 +55,54 @@ public class SequenceDescriptor extends SequenceTypeDescriptor {
 \r
     public SequenceDescriptor() {\r
         super();\r
-        setExtendsWithoutFlatten(new SequenceTypeDescriptor());\r
+        setExtendsWithoutFlatten(new jalview.schemabinding.version2.SequenceTypeDescriptor());\r
         nsURI = "www.vamsas.ac.uk/jalview/version2";\r
         xmlName = "Sequence";\r
+        \r
+        //-- set grouping compositor\r
+        setCompositorAsSequence();\r
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
+        org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
+        //-- initialize attribute descriptors\r
+        \r
+        //-- initialize element descriptors\r
+        \r
+        //-- _DBRefList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.DBRef.class, "_DBRefList", "DBRef", org.exolab.castor.xml.NodeType.Element);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Sequence target = (Sequence) object;\r
+                return target.getDBRef();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Sequence target = (Sequence) object;\r
+                    target.addDBRef( (jalview.schemabinding.version2.DBRef) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new jalview.schemabinding.version2.DBRef();\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _DBRefList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
     } //-- jalview.schemabinding.version2.SequenceDescriptor()\r
 \r
 \r