aligned not used

[jalview.git] / src / jalview / schemabinding / version2 / SequenceSet.java

diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java
index 187139d..6f0342b 100755 (executable)
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -41,16 +41,6 @@ public class SequenceSet implements java.io.Serializable {
     private java.lang.String _gapChar;\r
 \r
     /**\r
-     * Field _aligned\r
-     */\r
-    private boolean _aligned;\r
-\r
-    /**\r
-     * keeps track of state for field: _aligned\r
-     */\r
-    private boolean _has_aligned;\r
-\r
-    /**\r
      * Field _sequenceList\r
      */\r
     private java.util.Vector _sequenceList;\r
@@ -131,15 +121,6 @@ public class SequenceSet implements java.io.Serializable {
     } //-- void addSequence(int, jalview.schemabinding.version2.Sequence) \r
 \r
     /**\r
-     * Method deleteAligned\r
-     * \r
-     */\r
-    public void deleteAligned()\r
-    {\r
-        this._has_aligned= false;\r
-    } //-- void deleteAligned() \r
-\r
-    /**\r
      * Method enumerateAnnotation\r
      * \r
      * \r
@@ -164,17 +145,6 @@ public class SequenceSet implements java.io.Serializable {
     } //-- java.util.Enumeration enumerateSequence() \r
 \r
     /**\r
-     * Returns the value of field 'aligned'.\r
-     * \r
-     * @return boolean\r
-     * @return the value of field 'aligned'.\r
-     */\r
-    public boolean getAligned()\r
-    {\r
-        return this._aligned;\r
-    } //-- boolean getAligned() \r
-\r
-    /**\r
      * Method getAnnotation\r
      * \r
      * \r
@@ -282,18 +252,6 @@ public class SequenceSet implements java.io.Serializable {
     } //-- int getSequenceCount() \r
 \r
     /**\r
-     * Method hasAligned\r
-     * \r
-     * \r
-     * \r
-     * @return boolean\r
-     */\r
-    public boolean hasAligned()\r
-    {\r
-        return this._has_aligned;\r
-    } //-- boolean hasAligned() \r
-\r
-    /**\r
      * Method isValid\r
      * \r
      * \r
@@ -388,17 +346,6 @@ public class SequenceSet implements java.io.Serializable {
     } //-- jalview.schemabinding.version2.Sequence removeSequence(int) \r
 \r
     /**\r
-     * Sets the value of field 'aligned'.\r
-     * \r
-     * @param aligned the value of field 'aligned'.\r
-     */\r
-    public void setAligned(boolean aligned)\r
-    {\r
-        this._aligned = aligned;\r
-        this._has_aligned = true;\r
-    } //-- void setAligned(boolean) \r
-\r
-    /**\r
      * Method setAnnotation\r
      * \r
      * \r