DBRefs and HiddenRegions saved

[jalview.git] / src / jalview / schemabinding / version2 / Viewport.java

diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java
index 543c110..557e454 100755 (executable)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -15,6 +15,8 @@ import java.io.IOException;
 import java.io.Reader;\r
 import java.io.Serializable;\r
 import java.io.Writer;\r
+import java.util.Enumeration;\r
+import java.util.Vector;\r
 import org.exolab.castor.xml.MarshalException;\r
 import org.exolab.castor.xml.Marshaller;\r
 import org.exolab.castor.xml.Unmarshaller;\r
@@ -283,6 +285,11 @@ public class Viewport implements java.io.Serializable {
      */\r
     private jalview.schemabinding.version2.AnnotationColours _annotationColours;\r
 \r
+    /**\r
+     * Field _hiddenColumnsList\r
+     */\r
+    private java.util.Vector _hiddenColumnsList;\r
+\r
 \r
       //----------------/\r
      //- Constructors -/\r
@@ -290,6 +297,7 @@ public class Viewport implements java.io.Serializable {
 \r
     public Viewport() {\r
         super();\r
+        _hiddenColumnsList = new Vector();\r
     } //-- jalview.schemabinding.version2.Viewport()\r
 \r
 \r
@@ -298,6 +306,33 @@ public class Viewport implements java.io.Serializable {
     //-----------/\r
 \r
     /**\r
+     * Method addHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param vHiddenColumns\r
+     */\r
+    public void addHiddenColumns(jalview.schemabinding.version2.HiddenColumns vHiddenColumns)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _hiddenColumnsList.addElement(vHiddenColumns);\r
+    } //-- void addHiddenColumns(jalview.schemabinding.version2.HiddenColumns) \r
+\r
+    /**\r
+     * Method addHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vHiddenColumns\r
+     */\r
+    public void addHiddenColumns(int index, jalview.schemabinding.version2.HiddenColumns vHiddenColumns)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _hiddenColumnsList.insertElementAt(vHiddenColumns, index);\r
+    } //-- void addHiddenColumns(int, jalview.schemabinding.version2.HiddenColumns) \r
+\r
+    /**\r
      * Method deleteConsThreshold\r
      * \r
      */\r
@@ -505,6 +540,18 @@ public class Viewport implements java.io.Serializable {
     } //-- void deleteYpos() \r
 \r
     /**\r
+     * Method enumerateHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @return Enumeration\r
+     */\r
+    public java.util.Enumeration enumerateHiddenColumns()\r
+    {\r
+        return _hiddenColumnsList.elements();\r
+    } //-- java.util.Enumeration enumerateHiddenColumns() \r
+\r
+    /**\r
      * Returns the value of field 'annotationColours'.\r
      * \r
      * @return AnnotationColours\r
@@ -593,6 +640,54 @@ public class Viewport implements java.io.Serializable {
     } //-- int getHeight() \r
 \r
     /**\r
+     * Method getHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return HiddenColumns\r
+     */\r
+    public jalview.schemabinding.version2.HiddenColumns getHiddenColumns(int index)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _hiddenColumnsList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        \r
+        return (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList.elementAt(index);\r
+    } //-- jalview.schemabinding.version2.HiddenColumns getHiddenColumns(int) \r
+\r
+    /**\r
+     * Method getHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @return HiddenColumns\r
+     */\r
+    public jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns()\r
+    {\r
+        int size = _hiddenColumnsList.size();\r
+        jalview.schemabinding.version2.HiddenColumns[] mArray = new jalview.schemabinding.version2.HiddenColumns[size];\r
+        for (int index = 0; index < size; index++) {\r
+            mArray[index] = (jalview.schemabinding.version2.HiddenColumns) _hiddenColumnsList.elementAt(index);\r
+        }\r
+        return mArray;\r
+    } //-- jalview.schemabinding.version2.HiddenColumns[] getHiddenColumns() \r
+\r
+    /**\r
+     * Method getHiddenColumnsCount\r
+     * \r
+     * \r
+     * \r
+     * @return int\r
+     */\r
+    public int getHiddenColumnsCount()\r
+    {\r
+        return _hiddenColumnsList.size();\r
+    } //-- int getHiddenColumnsCount() \r
+\r
+    /**\r
      * Returns the value of field 'pidSelected'.\r
      * \r
      * @return boolean\r
@@ -1124,6 +1219,30 @@ public class Viewport implements java.io.Serializable {
     } //-- void marshal(org.xml.sax.ContentHandler) \r
 \r
     /**\r
+     * Method removeAllHiddenColumns\r
+     * \r
+     */\r
+    public void removeAllHiddenColumns()\r
+    {\r
+        _hiddenColumnsList.removeAllElements();\r
+    } //-- void removeAllHiddenColumns() \r
+\r
+    /**\r
+     * Method removeHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return HiddenColumns\r
+     */\r
+    public jalview.schemabinding.version2.HiddenColumns removeHiddenColumns(int index)\r
+    {\r
+        java.lang.Object obj = _hiddenColumnsList.elementAt(index);\r
+        _hiddenColumnsList.removeElementAt(index);\r
+        return (jalview.schemabinding.version2.HiddenColumns) obj;\r
+    } //-- jalview.schemabinding.version2.HiddenColumns removeHiddenColumns(int) \r
+\r
+    /**\r
      * Sets the value of field 'annotationColours'.\r
      * \r
      * @param annotationColours the value of field\r
@@ -1211,6 +1330,40 @@ public class Viewport implements java.io.Serializable {
     } //-- void setHeight(int) \r
 \r
     /**\r
+     * Method setHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vHiddenColumns\r
+     */\r
+    public void setHiddenColumns(int index, jalview.schemabinding.version2.HiddenColumns vHiddenColumns)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _hiddenColumnsList.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        _hiddenColumnsList.setElementAt(vHiddenColumns, index);\r
+    } //-- void setHiddenColumns(int, jalview.schemabinding.version2.HiddenColumns) \r
+\r
+    /**\r
+     * Method setHiddenColumns\r
+     * \r
+     * \r
+     * \r
+     * @param hiddenColumnsArray\r
+     */\r
+    public void setHiddenColumns(jalview.schemabinding.version2.HiddenColumns[] hiddenColumnsArray)\r
+    {\r
+        //-- copy array\r
+        _hiddenColumnsList.removeAllElements();\r
+        for (int i = 0; i < hiddenColumnsArray.length; i++) {\r
+            _hiddenColumnsList.addElement(hiddenColumnsArray[i]);\r
+        }\r
+    } //-- void setHiddenColumns(jalview.schemabinding.version2.HiddenColumns) \r
+\r
+    /**\r
      * Sets the value of field 'pidSelected'.\r
      * \r
      * @param pidSelected the value of field 'pidSelected'.\r