JAL-1764 add structure view type attribute to project schema

[jalview.git] / src / jalview / schemabinding / version2 / Viewport.java

diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java
index 000844e..7dcb3ee 100644 (file)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -267,6 +267,16 @@ public class Viewport implements java.io.Serializable {
     private boolean _has_showSequenceLogo;
 
     /**
+     * Field _normaliseSequenceLogo.
+     */
+    private boolean _normaliseSequenceLogo = false;
+
+    /**
+     * keeps track of state for field: _normaliseSequenceLogo
+     */
+    private boolean _has_normaliseSequenceLogo;
+
+    /**
      * Field _ignoreGapsinConsensus.
      */
     private boolean _ignoreGapsinConsensus = true;
@@ -380,6 +390,13 @@ public class Viewport implements java.io.Serializable {
     private java.lang.String _id;
 
     /**
+     * The viewport id of this viewport's (cdna/protein) coding
+     * complement, if any
+     *  
+     */
+    private java.lang.String _complementId;
+
+    /**
      * Field _width.
      */
     private int _width;
@@ -578,6 +595,13 @@ public class Viewport implements java.io.Serializable {
 
     /**
      */
+    public void deleteNormaliseSequenceLogo(
+    ) {
+        this._has_normaliseSequenceLogo= false;
+    }
+
+    /**
+     */
     public void deletePidSelected(
     ) {
         this._has_pidSelected= false;
@@ -856,6 +880,20 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Returns the value of field 'complementId'. The field
+     * 'complementId' has the following description: The viewport
+     * id of this viewport's (cdna/protein) coding complement, if
+     * any
+     *  
+     * 
+     * @return the value of field 'ComplementId'.
+     */
+    public java.lang.String getComplementId(
+    ) {
+        return this._complementId;
+    }
+
+    /**
      * Returns the value of field 'consThreshold'.
      * 
      * @return the value of field 'ConsThreshold'.
@@ -1017,6 +1055,16 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Returns the value of field 'normaliseSequenceLogo'.
+     * 
+     * @return the value of field 'NormaliseSequenceLogo'.
+     */
+    public boolean getNormaliseSequenceLogo(
+    ) {
+        return this._normaliseSequenceLogo;
+    }
+
+    /**
      * Returns the value of field 'pidSelected'.
      * 
      * @return the value of field 'PidSelected'.
@@ -1409,6 +1457,17 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Method hasNormaliseSequenceLogo.
+     * 
+     * @return true if at least one NormaliseSequenceLogo has been
+     * added
+     */
+    public boolean hasNormaliseSequenceLogo(
+    ) {
+        return this._has_normaliseSequenceLogo;
+    }
+
+    /**
      * Method hasPidSelected.
      * 
      * @return true if at least one PidSelected has been added
@@ -1733,6 +1792,16 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Returns the value of field 'normaliseSequenceLogo'.
+     * 
+     * @return the value of field 'NormaliseSequenceLogo'.
+     */
+    public boolean isNormaliseSequenceLogo(
+    ) {
+        return this._normaliseSequenceLogo;
+    }
+
+    /**
      * Returns the value of field 'pidSelected'.
      * 
      * @return the value of field 'PidSelected'.
@@ -2080,6 +2149,20 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Sets the value of field 'complementId'. The field
+     * 'complementId' has the following description: The viewport
+     * id of this viewport's (cdna/protein) coding complement, if
+     * any
+     *  
+     * 
+     * @param complementId the value of field 'complementId'.
+     */
+    public void setComplementId(
+            final java.lang.String complementId) {
+        this._complementId = complementId;
+    }
+
+    /**
      * Sets the value of field 'consThreshold'.
      * 
      * @param consThreshold the value of field 'consThreshold'.
@@ -2240,6 +2323,18 @@ public class Viewport implements java.io.Serializable {
     }
 
     /**
+     * Sets the value of field 'normaliseSequenceLogo'.
+     * 
+     * @param normaliseSequenceLogo the value of field
+     * 'normaliseSequenceLogo'.
+     */
+    public void setNormaliseSequenceLogo(
+            final boolean normaliseSequenceLogo) {
+        this._normaliseSequenceLogo = normaliseSequenceLogo;
+        this._has_normaliseSequenceLogo = true;
+    }
+
+    /**
      * Sets the value of field 'pidSelected'.
      * 
      * @param pidSelected the value of field 'pidSelected'.