profile visualizations are now logos

[jalview.git] / src / jalview / schemabinding / version2 / Viewport.java

diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java
index 7dbeedd..b7f14f5 100755 (executable)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -268,14 +268,14 @@ public class Viewport implements java.io.Serializable {
     private boolean _has_showConsensusHistogram;\r
 \r
     /**\r
-     * Field _showConsensusProfile.\r
+     * Field _showSequenceLogo.\r
      */\r
-    private boolean _showConsensusProfile = false;\r
+    private boolean _showSequenceLogo = false;\r
 \r
     /**\r
-     * keeps track of state for field: _showConsensusProfile\r
+     * keeps track of state for field: _showSequenceLogo\r
      */\r
-    private boolean _has_showConsensusProfile;\r
+    private boolean _has_showSequenceLogo;\r
 \r
     /**\r
      * Field _ignoreGapsinConsensus.\r
@@ -610,13 +610,6 @@ public class Viewport implements java.io.Serializable {
 \r
     /**\r
      */\r
-    public void deleteShowConsensusProfile(\r
-    ) {\r
-        this._has_showConsensusProfile= false;\r
-    }\r
-\r
-    /**\r
-     */\r
     public void deleteShowDbRefTooltip(\r
     ) {\r
         this._has_showDbRefTooltip= false;\r
@@ -659,6 +652,13 @@ public class Viewport implements java.io.Serializable {
 \r
     /**\r
      */\r
+    public void deleteShowSequenceLogo(\r
+    ) {\r
+        this._has_showSequenceLogo= false;\r
+    }\r
+\r
+    /**\r
+     */\r
     public void deleteShowText(\r
     ) {\r
         this._has_showText= false;\r
@@ -1026,16 +1026,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Returns the value of field 'showConsensusProfile'.\r
-     * \r
-     * @return the value of field 'ShowConsensusProfile'.\r
-     */\r
-    public boolean getShowConsensusProfile(\r
-    ) {\r
-        return this._showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Returns the value of field 'showDbRefTooltip'.\r
      * \r
      * @return the value of field 'ShowDbRefTooltip'.\r
@@ -1096,6 +1086,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Returns the value of field 'showSequenceLogo'.\r
+     * \r
+     * @return the value of field 'ShowSequenceLogo'.\r
+     */\r
+    public boolean getShowSequenceLogo(\r
+    ) {\r
+        return this._showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Returns the value of field 'showText'.\r
      * \r
      * @return the value of field 'ShowText'.\r
@@ -1409,17 +1409,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Method hasShowConsensusProfile.\r
-     * \r
-     * @return true if at least one ShowConsensusProfile has been\r
-     * added\r
-     */\r
-    public boolean hasShowConsensusProfile(\r
-    ) {\r
-        return this._has_showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Method hasShowDbRefTooltip.\r
      * \r
      * @return true if at least one ShowDbRefTooltip has been added\r
@@ -1483,6 +1472,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Method hasShowSequenceLogo.\r
+     * \r
+     * @return true if at least one ShowSequenceLogo has been added\r
+     */\r
+    public boolean hasShowSequenceLogo(\r
+    ) {\r
+        return this._has_showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Method hasShowText.\r
      * \r
      * @return true if at least one ShowText has been added\r
@@ -1723,16 +1722,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Returns the value of field 'showConsensusProfile'.\r
-     * \r
-     * @return the value of field 'ShowConsensusProfile'.\r
-     */\r
-    public boolean isShowConsensusProfile(\r
-    ) {\r
-        return this._showConsensusProfile;\r
-    }\r
-\r
-    /**\r
      * Returns the value of field 'showDbRefTooltip'.\r
      * \r
      * @return the value of field 'ShowDbRefTooltip'.\r
@@ -1793,6 +1782,16 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Returns the value of field 'showSequenceLogo'.\r
+     * \r
+     * @return the value of field 'ShowSequenceLogo'.\r
+     */\r
+    public boolean isShowSequenceLogo(\r
+    ) {\r
+        return this._showSequenceLogo;\r
+    }\r
+\r
+    /**\r
      * Returns the value of field 'showText'.\r
      * \r
      * @return the value of field 'ShowText'.\r
@@ -2192,18 +2191,6 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
-     * Sets the value of field 'showConsensusProfile'.\r
-     * \r
-     * @param showConsensusProfile the value of field\r
-     * 'showConsensusProfile'.\r
-     */\r
-    public void setShowConsensusProfile(\r
-            final boolean showConsensusProfile) {\r
-        this._showConsensusProfile = showConsensusProfile;\r
-        this._has_showConsensusProfile = true;\r
-    }\r
-\r
-    /**\r
      * Sets the value of field 'showDbRefTooltip'.\r
      * \r
      * @param showDbRefTooltip the value of field 'showDbRefTooltip'\r
@@ -2274,6 +2261,17 @@ public class Viewport implements java.io.Serializable {
     }\r
 \r
     /**\r
+     * Sets the value of field 'showSequenceLogo'.\r
+     * \r
+     * @param showSequenceLogo the value of field 'showSequenceLogo'\r
+     */\r
+    public void setShowSequenceLogo(\r
+            final boolean showSequenceLogo) {\r
+        this._showSequenceLogo = showSequenceLogo;\r
+        this._has_showSequenceLogo = true;\r
+    }\r
+\r
+    /**\r
      * Sets the value of field 'showText'.\r
      * \r
      * @param showText the value of field 'showText'.\r