/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
+ * \r
+ * This file is part of Jalview.\r
+ * \r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
+ * \r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
-\r
package jalview.schemabinding.version2.descriptors;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
import jalview.schemabinding.version2.JSeq;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class JSeqDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _elementDefinition.\r
- */\r
- private boolean _elementDefinition;\r
-\r
- /**\r
- * Field _nsPrefix.\r
- */\r
- private java.lang.String _nsPrefix;\r
-\r
- /**\r
- * Field _nsURI.\r
- */\r
- private java.lang.String _nsURI;\r
-\r
- /**\r
- * Field _xmlName.\r
- */\r
- private java.lang.String _xmlName;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JSeqDescriptor() {\r
- super();\r
- _nsURI = "www.jalview.org";\r
- _xmlName = "JSeq";\r
- _elementDefinition = true;\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if (!target.hasColour()) { return null; }\r
- return new java.lang.Integer(target.getColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteColour();\r
- return;\r
- }\r
- target.setColour( ((java.lang.Integer) value).intValue());\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _start\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if (!target.hasStart()) { return null; }\r
- return new java.lang.Integer(target.getStart());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) { return; }\r
- \r
- target.setStart( ((java.lang.Integer) value).intValue());\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _start\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _end\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if (!target.hasEnd()) { return null; }\r
- return new java.lang.Integer(target.getEnd());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) { return; }\r
- \r
- target.setEnd( ((java.lang.Integer) value).intValue());\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _end\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.setId( (java.lang.String) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _hidden\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_hidden", "hidden", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if (!target.hasHidden()) { return null; }\r
- return (target.getHidden() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteHidden();\r
- return;\r
- }\r
- target.setHidden( ((java.lang.Boolean) value).booleanValue());\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _hidden\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
+public class JSeqDescriptor extends\r
+ org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
+{\r
+\r
+ // --------------------------/\r
+ // - Class/Member Variables -/\r
+ // --------------------------/\r
+\r
+ /**\r
+ * Field _elementDefinition.\r
+ */\r
+ private boolean _elementDefinition;\r
+\r
+ /**\r
+ * Field _nsPrefix.\r
+ */\r
+ private java.lang.String _nsPrefix;\r
+\r
+ /**\r
+ * Field _nsURI.\r
+ */\r
+ private java.lang.String _nsURI;\r
+\r
+ /**\r
+ * Field _xmlName.\r
+ */\r
+ private java.lang.String _xmlName;\r
+\r
+ // ----------------/\r
+ // - Constructors -/\r
+ // ----------------/\r
+\r
+ public JSeqDescriptor()\r
+ {\r
+ super();\r
+ _nsURI = "www.jalview.org";\r
+ _xmlName = "JSeq";\r
+ _elementDefinition = true;\r
+\r
+ // -- set grouping compositor\r
+ setCompositorAsSequence();\r
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+ org.exolab.castor.mapping.FieldHandler handler = null;\r
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+ // -- initialize attribute descriptors\r
+\r
+ // -- _colour\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_colour", "colour",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ if (!target.hasColour())\r
+ {\r
+ return null;\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _featuresList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Features.class, "_featuresList", "features", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getFeatures();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.addFeatures( (jalview.schemabinding.version2.Features) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.removeAllFeatures();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.Features();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _featuresList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ return new java.lang.Integer(target.getColour());\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteColour();\r
+ return;\r
+ }\r
+ target.setColour(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _pdbidsList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Pdbids.class, "_pdbidsList", "pdbids", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getPdbids();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.addPdbids( (jalview.schemabinding.version2.Pdbids) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.removeAllPdbids();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.Pdbids();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _pdbidsList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _colour\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _start\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_start", "start",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ if (!target.hasStart())\r
+ {\r
+ return null;\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _hiddenSequencesList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_hiddenSequencesList", "hiddenSequences", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getHiddenSequences();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) { return; }\r
- \r
- target.addHiddenSequences( ((java.lang.Integer) value).intValue());\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.removeAllHiddenSequences();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _hiddenSequencesList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.IntValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(-2147483648);\r
- typeValidator.setMaxInclusive(2147483647);\r
+ return new java.lang.Integer(target.getStart());\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ // ignore null values for non optional primitives\r
+ if (value == null)\r
+ {\r
+ return;\r
+ }\r
+\r
+ target.setStart(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _start\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _end\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_end", "end",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ if (!target.hasEnd())\r
+ {\r
+ return null;\r
+ }\r
+ return new java.lang.Integer(target.getEnd());\r
+ }\r
\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ // ignore null values for non optional primitives\r
+ if (value == null)\r
+ {\r
+ return;\r
+ }\r
\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
+ target.setEnd(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getAccessMode.\r
- * \r
- * @return the access mode specified for this class.\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode(\r
- ) {\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
return null;\r
- }\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method getIdentity.\r
- * \r
- * @return the identity field, null if this class has no\r
- * identity.\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
- ) {\r
- return super.getIdentity();\r
+ // -- validation code for: _end\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _id\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_id", "id",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ return target.getId();\r
+ }\r
\r
- /**\r
- * Method getJavaClass.\r
- * \r
- * @return the Java class represented by this descriptor.\r
- */\r
- public java.lang.Class getJavaClass(\r
- ) {\r
- return jalview.schemabinding.version2.JSeq.class;\r
- }\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target.setId((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpacePrefix.\r
- * \r
- * @return the namespace prefix to use when marshaling as XML.\r
- */\r
- public java.lang.String getNameSpacePrefix(\r
- ) {\r
- return _nsPrefix;\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _id\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _hidden\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Boolean.TYPE, "_hidden", "hidden",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ if (!target.hasHidden())\r
+ {\r
+ return null;\r
+ }\r
+ return (target.getHidden() ? java.lang.Boolean.TRUE\r
+ : java.lang.Boolean.FALSE);\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ // if null, use delete method for optional primitives\r
+ if (value == null)\r
+ {\r
+ target.deleteHidden();\r
+ return;\r
+ }\r
+ target.setHidden(((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpaceURI.\r
- * \r
- * @return the namespace URI used when marshaling and\r
- * unmarshaling as XML.\r
- */\r
- public java.lang.String getNameSpaceURI(\r
- ) {\r
- return _nsURI;\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _hidden\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- initialize element descriptors\r
\r
- /**\r
- * Method getValidator.\r
- * \r
- * @return a specific validator for the class described by this\r
- * ClassDescriptor.\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator(\r
- ) {\r
- return this;\r
+ // -- _featuresList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.Features.class, "_featuresList",\r
+ "features", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ return target.getFeatures();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target\r
+ .addFeatures((jalview.schemabinding.version2.Features) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target.removeAllFeatures();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.Features();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.jalview.org");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _featuresList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _pdbidsList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.Pdbids.class, "_pdbidsList",\r
+ "pdbids", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ return target.getPdbids();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target.addPdbids((jalview.schemabinding.version2.Pdbids) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target.removeAllPdbids();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getXMLName.\r
- * \r
- * @return the XML Name for the Class being described.\r
- */\r
- public java.lang.String getXMLName(\r
- ) {\r
- return _xmlName;\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.Pdbids();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.jalview.org");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _pdbidsList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _hiddenSequencesList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.Integer.TYPE, "_hiddenSequencesList",\r
+ "hiddenSequences", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ return target.getHiddenSequences();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ // ignore null values for non optional primitives\r
+ if (value == null)\r
+ {\r
+ return;\r
+ }\r
\r
- /**\r
- * Method isElementDefinition.\r
- * \r
- * @return true if XML schema definition of this Class is that\r
- * of a global\r
- * element or element with anonymous type definition.\r
- */\r
- public boolean isElementDefinition(\r
- ) {\r
- return _elementDefinition;\r
+ target.addHiddenSequences(((java.lang.Integer) value).intValue());\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ JSeq target = (JSeq) object;\r
+ target.removeAllHiddenSequences();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.jalview.org");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _hiddenSequencesList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.IntValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.IntValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive(-2147483648);\r
+ typeValidator.setMaxInclusive(2147483647);\r
}\r
+ desc.setValidator(fieldValidator);\r
+ }\r
+\r
+ // -----------/\r
+ // - Methods -/\r
+ // -----------/\r
+\r
+ /**\r
+ * Method getAccessMode.\r
+ * \r
+ * @return the access mode specified for this class.\r
+ */\r
+ public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+ {\r
+ return null;\r
+ }\r
+\r
+ /**\r
+ * Method getIdentity.\r
+ * \r
+ * @return the identity field, null if this class has no identity.\r
+ */\r
+ public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+ {\r
+ return super.getIdentity();\r
+ }\r
+\r
+ /**\r
+ * Method getJavaClass.\r
+ * \r
+ * @return the Java class represented by this descriptor.\r
+ */\r
+ public java.lang.Class getJavaClass()\r
+ {\r
+ return jalview.schemabinding.version2.JSeq.class;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpacePrefix.\r
+ * \r
+ * @return the namespace prefix to use when marshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpacePrefix()\r
+ {\r
+ return _nsPrefix;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpaceURI.\r
+ * \r
+ * @return the namespace URI used when marshaling and unmarshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpaceURI()\r
+ {\r
+ return _nsURI;\r
+ }\r
+\r
+ /**\r
+ * Method getValidator.\r
+ * \r
+ * @return a specific validator for the class described by this\r
+ * ClassDescriptor.\r
+ */\r
+ public org.exolab.castor.xml.TypeValidator getValidator()\r
+ {\r
+ return this;\r
+ }\r
+\r
+ /**\r
+ * Method getXMLName.\r
+ * \r
+ * @return the XML Name for the Class being described.\r
+ */\r
+ public java.lang.String getXMLName()\r
+ {\r
+ return _xmlName;\r
+ }\r
+\r
+ /**\r
+ * Method isElementDefinition.\r
+ * \r
+ * @return true if XML schema definition of this Class is that of a global\r
+ * element or element with anonymous type definition.\r
+ */\r
+ public boolean isElementDefinition()\r
+ {\r
+ return _elementDefinition;\r
+ }\r
\r
}\r