/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
*/\r
package jalview.schemes;\r
\r
-\r
import java.awt.*;\r
-import jalview.analysis.AAFrequency;\r
+\r
+import jalview.analysis.*;\r
\r
public class Blosum62ColourScheme\r
extends ResidueColourScheme\r
\r
public Color findColour(char res, int j)\r
{\r
- if ('a' <= res && res <= 'z' )\r
+ if ('a' <= res && res <= 'z')\r
{\r
- // TO UPPERCASE !!!\r
- res -= ('a' - 'A');\r
+ // TO UPPERCASE !!!\r
+ res -= ('a' - 'A');\r
}\r
\r
if (consensus == null ||\r
\r
Color currentColour;\r
\r
- if (!jalview.util.Comparison.isGap( res ))\r
+ if (!jalview.util.Comparison.isGap(res))\r
{\r
String max = (String) consensus[j].get(AAFrequency.MAXRESIDUE);\r
\r
}\r
}\r
\r
- if(conservationColouring)\r
- currentColour = applyConservation(currentColour, j);\r
+ if (conservationColouring)\r
+ {\r
+ currentColour = applyConservation(currentColour, j);\r
+ }\r
}\r
else\r
{\r