all can threshold

[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 7798672..566d7ed 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -32,6 +32,9 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 \r
   public Color findColour(String s, int j)\r
   {\r
+    if( threshold!=0 && !aboveThreshold(s,j))\r
+      return Color.white;\r
+\r
     Hashtable hash = (Hashtable)consensus.elementAt(j);\r
 \r
     if (!jalview.util.Comparison.isGap((s.charAt(0))))\r
@@ -60,9 +63,5 @@ public class Blosum62ColourScheme extends ResidueColourScheme
 \r
   }\r
 \r
-  public boolean canThreshold()\r
-  {\r
-    return true;\r
-  }\r
 \r
 }\r