isGap method implemented in utils

[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index d91d49f..d0546dc 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -36,9 +36,10 @@ public class Blosum62ColourScheme extends ResidueColourScheme
     this.av = av;\r
   }\r
 \r
-  public Color findColour(SequenceI seq, String s, int j, Vector aa)\r
+  public Color findColour(String s, int j, Vector aa)\r
   {\r
-      if (!s.equals("-") && !s.equals(".") && !s.equals(" "))\r
+\r
+      if (!jalview.util.Comparison.isGap((s.charAt(0))))\r
       {\r
         String max = av.getVisibleConsensus().charAt(j) + "";\r
 \r