\r
public Color findColour(String s, int j)\r
{\r
+\r
char res = s.charAt(0);\r
if ('a' <= res && res <= 'z' )\r
{\r
return Color.white;\r
}\r
\r
+ Color currentColour;\r
+\r
if (!jalview.util.Comparison.isGap( res ))\r
{\r
String max = (String) consensus[j].get(AAFrequency.MAXRESIDUE);\r
}\r
\r
if(conservationColouring)\r
- applyConservation(j);\r
+ applyConservation(currentColour, j);\r
}\r
else\r
{\r