Merge remote-tracking branch 'origin/Tcoffee_JAL-1065' into develop

[jalview.git] / src / jalview / schemes / ColourSchemeI.java

diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java
index 5c036e3..9ebe791 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -17,13 +17,16 @@
  */
 package jalview.schemes;
 
-import java.awt.*;
+import java.awt.Color;
+
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceI;
 
 public interface ColourSchemeI
 {
   public Color findColour(char c);
 
-  public Color findColour(char c, int j);
+  public Color findColour(char c, int j, SequenceI seq);
 
   public void setConsensus(java.util.Hashtable[] h);
 
@@ -39,4 +42,6 @@ public interface ColourSchemeI
 
   public void setThreshold(int ct, boolean ignoreGaps);
 
+  public void alignmentChanged(AnnotatedCollectionI alignment);
+
 }