1.1 compatible, formatting changes

[jalview.git] / src / jalview / schemes / ColourSchemeProperty.java

diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java
index 518f7ab..6488b8d 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -1,28 +1,100 @@
 package jalview.schemes;\r
 \r
-public class ColourSchemeProperty {\r
-  String description;\r
-  String className;\r
-  String menuString = null;\r
-\r
-  public ColourSchemeProperty(String description, String className, String menuString) {\r
-    this.description = new String(description);\r
-    this.className   = new String(className);\r
-    if (menuString != null) {\r
-      this.menuString = new String(menuString);\r
-    }\r
-  }\r
+public class ColourSchemeProperty\r
+{\r
+  public static final int CLUSTAL = 0;\r
+  public static final int BLOSUM = 1;\r
+  public static final int PID = 2;\r
+  public static final int ZAPPO = 3;\r
+  public static final int HYDROPHOBIC=4;\r
+  public static final int HELIX=5;\r
+  public static final int STRAND=6;\r
+  public static final int TURN = 7;\r
+  public static final int BURIED = 8;\r
+  public static final int NUCLEOTIDE = 9;\r
+  public static final int USER_DEFINED = 10;\r
+  public static final int NONE = 11;\r
+\r
+  public static int getColourIndexFromName(String name)\r
+  {\r
+    int ret=11;\r
+    if(name.equalsIgnoreCase("Clustal"))\r
+      ret = CLUSTAL;\r
+    else if(name.equalsIgnoreCase("Blosum62"))\r
+      ret = BLOSUM;\r
+    else if(name.equalsIgnoreCase("% Identity"))\r
+      ret = PID;\r
+    else if(name.equalsIgnoreCase("Zappo"))\r
+      ret = ZAPPO;\r
+    else if(name.equalsIgnoreCase("Hydrophobic"))\r
+      ret = HYDROPHOBIC;\r
+    else if(name.equalsIgnoreCase("Helix Propensity"))\r
+      ret = HELIX;\r
+    else if(name.equalsIgnoreCase("Strand Propensity"))\r
+      ret = STRAND;\r
+    else if(name.equalsIgnoreCase("Turn Propensity"))\r
+      ret = TURN;\r
+    else if(name.equalsIgnoreCase("Buried Index"))\r
+      ret = BURIED;\r
+    else if(name.equalsIgnoreCase("Nucleotide"))\r
+      ret = NUCLEOTIDE;\r
+    else if(name.equalsIgnoreCase("User Defined"))\r
+      ret =  USER_DEFINED;\r
 \r
-  public String getClassName() {\r
-    return className;\r
+    return ret;\r
   }\r
-  public String getDescription() {\r
-    return description;\r
+\r
+  public static String getColourName(int index)\r
+  {\r
+    String ret=null;\r
+    switch(index)\r
+    {\r
+      case CLUSTAL: ret = "Clustal";    break;\r
+      case BLOSUM:  ret = "Blosum62";   break;\r
+      case PID:     ret = "% Identity"; break;\r
+      case ZAPPO:   ret = "Zappo";      break;\r
+      case HYDROPHOBIC: ret="Hydrophobic";break;\r
+      case HELIX:   ret="Helix Propensity";break;\r
+      case STRAND:  ret="Strand Propensity";break;\r
+      case TURN:    ret="Turn Propensity";break;\r
+      case BURIED:  ret="Buried Index";break;\r
+      case NUCLEOTIDE:ret="Nucleotide"; break;\r
+      case USER_DEFINED:ret="User Defined";break;\r
+      default: ret = "None"; break;\r
+    }\r
+    return ret;\r
   }\r
-  public String getMenuString() {\r
-    return menuString;\r
+\r
+  public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al, String name)\r
+  {\r
+    return getColour(al, getColourIndexFromName(name));\r
   }\r
-  public boolean isMenuItem() {\r
-    return (menuString != null);\r
+\r
+  public static ColourSchemeI getColour(jalview.datamodel.AlignmentI al, int index)\r
+  {\r
+    ColourSchemeI cs = null;\r
+    switch(index)\r
+    {\r
+      case CLUSTAL: cs = new ClustalxColourScheme(al.getSequences(), al.getWidth()); break;\r
+      case BLOSUM: cs = new Blosum62ColourScheme(); break;\r
+      case PID: cs = new PIDColourScheme();  break;\r
+      case ZAPPO: cs = new ZappoColourScheme(); break;\r
+      case HYDROPHOBIC: cs = new HydrophobicColourScheme(); break;\r
+      case HELIX: cs = new HelixColourScheme(); break;\r
+      case STRAND: cs = new StrandColourScheme(); break;\r
+      case TURN: cs = new TurnColourScheme(); break;\r
+      case BURIED: cs = new BuriedColourScheme(); break;\r
+      case NUCLEOTIDE: cs = new NucleotideColourScheme(); break;\r
+      case USER_DEFINED:\r
+       // if(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR")!=null)\r
+        {\r
+       //   cs = jalview.gui.UserDefinedColours.loadDefaultColours(jalview.bin.Cache.getProperty("USER_DEFINED_COLOUR"));\r
+        }\r
+        break;\r
+\r
+      default: break;\r
+    }\r
+\r
+    return cs;\r
   }\r
 }\r