JAL-3066 Automatically discoverable Protein sequence analysis services

[jalview.git] / src / jalview / schemes / FollowerColourScheme.java

diff --git a/src/jalview/schemes/FollowerColourScheme.java b/src/jalview/schemes/FollowerColourScheme.java
index 94f92b7..24b7713 100644 (file)
--- a/src/jalview/schemes/FollowerColourScheme.java
+++ b/src/jalview/schemes/FollowerColourScheme.java
@@ -20,13 +20,8 @@
  */
 package jalview.schemes;
 
-import jalview.analysis.Conservation;
+import jalview.api.AlignViewportI;
 import jalview.datamodel.AnnotatedCollectionI;
-import jalview.datamodel.ProfilesI;
-import jalview.datamodel.SequenceCollectionI;
-import jalview.datamodel.SequenceI;
-
-import java.util.Map;
 
 /**
  * Colourscheme that takes its colours from some other colourscheme
@@ -37,7 +32,7 @@ import java.util.Map;
 public class FollowerColourScheme extends ResidueColourScheme
 {
 
-  protected ColourSchemeI colourScheme;
+  private ColourSchemeI colourScheme;
 
   public ColourSchemeI getBaseColour()
   {
@@ -45,33 +40,6 @@ public class FollowerColourScheme extends ResidueColourScheme
   }
 
   @Override
-  public void setConsensus(ProfilesI consensus)
-  {
-    if (colourScheme != null)
-    {
-      colourScheme.setConsensus(consensus);
-    }
-  }
-
-  @Override
-  public void setConservation(Conservation cons)
-  {
-    if (colourScheme != null)
-    {
-      colourScheme.setConservation(cons);
-    }
-  }
-
-  @Override
-  public void setConservationInc(int i)
-  {
-    if (colourScheme != null)
-    {
-      colourScheme.setConservationInc(i);
-    }
-  }
-
-  @Override
   public String getSchemeName()
   {
     return "Follower";
@@ -82,10 +50,20 @@ public class FollowerColourScheme extends ResidueColourScheme
    * be coloured
    */
   @Override
-  public ColourSchemeI getInstance(AnnotatedCollectionI coll,
-          Map<SequenceI, SequenceCollectionI> hrs)
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
   {
     return new FollowerColourScheme();
   }
 
+  protected ColourSchemeI getColourScheme()
+  {
+    return colourScheme;
+  }
+
+  protected void setColourScheme(ColourSchemeI colourScheme)
+  {
+    this.colourScheme = colourScheme;
+  }
+
 }