.log(getHmm().getMatchEmissionProbability(column, symbol)
/ hmm.getBackgroundFrequencies().get(symbol));
- if (!probabilities.get(symbol).get(lengthBin)
+ if (!probabilities.containsKey(symbol)
+ || !probabilities.get(symbol).get(lengthBin)
.containsKey(format(llr)))
{
- return Color.white;
+ return new Color(140, 140, 140);
}