JAL-3806 more lax allowance (3 positions) for stop codon

[jalview.git] / src / jalview / schemes / HydrophobicColourScheme.java

diff --git a/src/jalview/schemes/HydrophobicColourScheme.java b/src/jalview/schemes/HydrophobicColourScheme.java
index 1c776a9..d886bdf 100755 (executable)
--- a/src/jalview/schemes/HydrophobicColourScheme.java
+++ b/src/jalview/schemes/HydrophobicColourScheme.java
@@ -20,7 +20,10 @@
  */
 package jalview.schemes;
 
-import java.awt.*;
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
+import java.awt.Color;
 
 /**
  * DOCUMENT ME!
@@ -47,8 +50,32 @@ public class HydrophobicColourScheme extends ScoreColourScheme
    * 
    * @return DOCUMENT ME!
    */
+  @Override
   public Color makeColour(float c)
   {
     return new Color(c, (float) 0.0, (float) 1.0 - c);
   }
+
+  @Override
+  public boolean isPeptideSpecific()
+  {
+    return true;
+  }
+
+  @Override
+  public String getSchemeName()
+  {
+    return JalviewColourScheme.Hydrophobic.toString();
+  }
+
+  /**
+   * Returns a new instance of this colour scheme with which the given data may
+   * be coloured
+   */
+  @Override
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
+  {
+    return new HydrophobicColourScheme();
+  }
 }