*/
package jalview.schemes;
+import jalview.api.AlignViewportI;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceGroup;
/*
* test whether this is the consensus (or joint consensus) residue
*/
- boolean matchesConsensus = consensusResidue.contains(
- String.valueOf(c));
+ boolean matchesConsensus = consensusResidue.contains(String.valueOf(c));
if (matchesConsensus)
{
for (int i = 0; i < thresholds.length; i++)
* be coloured
*/
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI coll,
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI coll,
Map<SequenceI, SequenceCollectionI> hrs)
{
return new PIDColourScheme();