JAL-1065 JAL-1066 - use direct object reference rather then index into alignment

[jalview.git] / src / jalview / schemes / PIDColourScheme.java

diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java
index 33a2b0a..a64bf20 100755 (executable)
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -17,10 +17,11 @@
  */
 package jalview.schemes;
 
-import java.awt.*;
+import jalview.analysis.AAFrequency;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
 
-import jalview.analysis.*;
-import jalview.datamodel.*;
+import java.awt.Color;
 
 public class PIDColourScheme extends ResidueColourScheme
 {
@@ -36,7 +37,9 @@ public class PIDColourScheme extends ResidueColourScheme
     this.thresholds = ResidueProperties.pidThresholds;
   }
 
-  public Color findColour(char c, int j)
+  
+  @Override
+  public Color findColour(char c, int j, SequenceI seq)
   {
     if ('a' <= c && c <= 'z')
     {