*/
package jalview.schemes;
+import jalview.api.AlignViewportI;
import jalview.datamodel.AnnotatedCollectionI;
-import jalview.datamodel.SequenceCollectionI;
-import jalview.datamodel.SequenceI;
-
-import java.awt.Color;
-import java.util.Map;
/**
* Class is based off of NucleotideColourScheme
ResidueProperties.purinepyrimidine);
}
- /**
- * Finds the corresponding color for the type of character inputed
- *
- * @param c
- * Character in sequence
- *
- * @return Color from purinepyrimidineIndex in
- * jalview.schemes.ResidueProperties
- */
- @Override
- public Color findColour(char c)
- {
- return colors[ResidueProperties.purinepyrimidineIndex[c]];
- }
-
@Override
public boolean isNucleotideSpecific()
{
* be coloured
*/
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI coll,
- Map<SequenceI, SequenceCollectionI> hrs)
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI coll)
{
return new PurinePyrimidineColourScheme();
}