JAL-3811 document SHOW_JWS2_SERVICES user preference and provide new menu option...

[jalview.git] / src / jalview / schemes / PurinePyrimidineColourScheme.java

diff --git a/src/jalview/schemes/PurinePyrimidineColourScheme.java b/src/jalview/schemes/PurinePyrimidineColourScheme.java
index 47b80c2..a8270cc 100644 (file)
--- a/src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/src/jalview/schemes/PurinePyrimidineColourScheme.java
@@ -20,12 +20,8 @@
  */
 package jalview.schemes;
 
+import jalview.api.AlignViewportI;
 import jalview.datamodel.AnnotatedCollectionI;
-import jalview.datamodel.SequenceCollectionI;
-import jalview.datamodel.SequenceI;
-
-import java.awt.Color;
-import java.util.Map;
 
 /**
  * Class is based off of NucleotideColourScheme
@@ -43,21 +39,6 @@ public class PurinePyrimidineColourScheme extends ResidueColourScheme
             ResidueProperties.purinepyrimidine);
   }
 
-  /**
-   * Finds the corresponding color for the type of character inputed
-   * 
-   * @param c
-   *          Character in sequence
-   * 
-   * @return Color from purinepyrimidineIndex in
-   *         jalview.schemes.ResidueProperties
-   */
-  @Override
-  public Color findColour(char c)
-  {
-    return colors[ResidueProperties.purinepyrimidineIndex[c]];
-  }
-
   @Override
   public boolean isNucleotideSpecific()
   {
@@ -75,8 +56,8 @@ public class PurinePyrimidineColourScheme extends ResidueColourScheme
    * be coloured
    */
   @Override
-  public ColourSchemeI getInstance(AnnotatedCollectionI coll,
-          Map<SequenceI, SequenceCollectionI> hrs)
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
   {
     return new PurinePyrimidineColourScheme();
   }