Percentage precalculated in aafrequency

[jalview.git] / src / jalview / schemes / ResidueProperties.java

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 14479a7..0b71381 100755 (executable)
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -138,25 +138,45 @@ public class ResidueProperties
   static\r
   {\r
     aa2Triplet.put("A", "ALA");\r
+    aa2Triplet.put("a", "ALA");\r
     aa2Triplet.put("R", "ARG");\r
+    aa2Triplet.put("r", "ARG");\r
     aa2Triplet.put("N", "ASN");\r
+    aa2Triplet.put("n", "ASN");\r
     aa2Triplet.put("D", "ASP");\r
+    aa2Triplet.put("d", "ASP");\r
     aa2Triplet.put("C", "CYS");\r
+    aa2Triplet.put("c", "CYS");\r
     aa2Triplet.put("Q", "GLN");\r
+    aa2Triplet.put("q", "GLN");\r
     aa2Triplet.put("E", "GLU");\r
+    aa2Triplet.put("e", "GLU");\r
     aa2Triplet.put("G", "GLY");\r
+    aa2Triplet.put("g", "GLY");\r
     aa2Triplet.put("H", "HIS");\r
+    aa2Triplet.put("h", "HIS");\r
     aa2Triplet.put("I", "ILE");\r
+    aa2Triplet.put("i", "ILE");\r
     aa2Triplet.put("L", "LEU");\r
+    aa2Triplet.put("l", "LEU");\r
     aa2Triplet.put("K", "LYS");\r
+    aa2Triplet.put("k", "LYS");\r
     aa2Triplet.put("M", "MET");\r
+    aa2Triplet.put("m", "MET");\r
     aa2Triplet.put("F", "PHE");\r
+    aa2Triplet.put("f", "PHE");\r
     aa2Triplet.put("P", "PRO");\r
+    aa2Triplet.put("p", "PRO");\r
     aa2Triplet.put("S", "SER");\r
+    aa2Triplet.put("s", "SER");\r
     aa2Triplet.put("T", "THR");\r
+    aa2Triplet.put("t", "THR");\r
     aa2Triplet.put("W", "TRP");\r
+    aa2Triplet.put("w", "TRP");\r
     aa2Triplet.put("Y", "TYR");\r
+    aa2Triplet.put("y", "TYR");\r
     aa2Triplet.put("V", "VAL");\r
+    aa2Triplet.put("v", "VAL");\r
   }\r
 \r
   public static String[] aa =\r