static
{
- aaIndex = new int[132];
- for(int i=0; i<132; i++)
- aaIndex[i] = -1;
+ aaIndex = new int[255];
+ for(int i=0; i<255; i++)
+ aaIndex[i] = 23;
aaIndex['A'] = 0;
aaIndex['R'] = 1;
aaIndex['z'] = 21;
aaIndex['x'] = 22;
aaIndex['u'] = 22;
- aaIndex['-'] = 23;
- aaIndex['*'] = 23;
- aaIndex['.'] = 23;
- aaIndex[' '] = 23;
}
static
{
- nucleotideIndex = new int[132];
- for (int i = 0; i < 132; i++)
+ nucleotideIndex = new int[255];
+ for (int i = 0; i < 255; i++)
nucleotideIndex[i] = -1;
nucleotideIndex['A'] = 0;