add lower case residue props

[jalview.git] / src / jalview / schemes / ResidueProperties.java

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 0a2c43e..95acf91 100755 (executable)
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -54,6 +54,29 @@ public class ResidueProperties {
     aaHash.put("B", new Integer(20));\r
     aaHash.put("Z", new Integer(21));\r
     aaHash.put("X", new Integer(22));\r
+    aaHash.put("a", new Integer(0));\r
+    aaHash.put("r", new Integer(1));\r
+    aaHash.put("n", new Integer(2));\r
+    aaHash.put("d", new Integer(3));\r
+    aaHash.put("c", new Integer(4));\r
+    aaHash.put("q", new Integer(5));\r
+    aaHash.put("e", new Integer(6));\r
+    aaHash.put("g", new Integer(7));\r
+    aaHash.put("h", new Integer(8));\r
+    aaHash.put("i", new Integer(9));\r
+    aaHash.put("l", new Integer(10));\r
+    aaHash.put("k", new Integer(11));\r
+    aaHash.put("m", new Integer(12));\r
+    aaHash.put("f", new Integer(13));\r
+    aaHash.put("p", new Integer(14));\r
+    aaHash.put("s", new Integer(15));\r
+    aaHash.put("t", new Integer(16));\r
+    aaHash.put("w", new Integer(17));\r
+    aaHash.put("y", new Integer(18));\r
+    aaHash.put("v", new Integer(19));\r
+    aaHash.put("b", new Integer(20));\r
+    aaHash.put("z", new Integer(21));\r
+    aaHash.put("x", new Integer(22));\r
     aaHash.put("-", new Integer(23));\r
     aaHash.put("*", new Integer(23));\r
     aaHash.put(".", new Integer(23));\r