aaIndex replaces aaHash

[jalview.git] / src / jalview / schemes / ScoreColourScheme.java

diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java
index c11e1ec..8d7a45a 100755 (executable)
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -99,7 +99,7 @@ public class ScoreColourScheme extends ResidueColourScheme
             return Color.white;\r
         }\r
 \r
-        currentColour = colors[((Integer) ResidueProperties.aaHash.get(s)).intValue()];\r
+        currentColour = colors[ ResidueProperties.aaIndex[s.charAt(0)] ];\r
 \r
         if(conservationColouring)\r
          applyConservation(j);\r