import jalview.analysis.scoremodels.PairwiseSeqScoreModel;
import jalview.api.analysis.ScoreModelI;
-public class ScoreMatrix extends PairwiseSeqScoreModel implements ScoreModelI
+public class ScoreMatrix extends PairwiseSeqScoreModel implements
+ ScoreModelI
{
String name;
-
+
@Override
public String getName()
{
* 0 for Protein Score matrix. 1 for dna score matrix
*/
int type;
+
/**
*
- * @param name Unique, human readable name for the matrix
- * @param matrix Pairwise scores indexed according to appropriate symbol alphabet
- * @param type 0 for Protein, 1 for NA
+ * @param name
+ * Unique, human readable name for the matrix
+ * @param matrix
+ * Pairwise scores indexed according to appropriate symbol alphabet
+ * @param type
+ * 0 for Protein, 1 for NA
*/
ScoreMatrix(String name, int[][] matrix, int type)
{
{
return type == 1;
}
+
@Override
public boolean isProtein()
{