AlignedCodonFrame holds mapping information between individual cDNA regions on dna...

[jalview.git] / src / jalview / schemes / StrandColourScheme.java

diff --git a/src/jalview/schemes/StrandColourScheme.java b/src/jalview/schemes/StrandColourScheme.java
index 466ae4f..ec57d50 100755 (executable)
--- a/src/jalview/schemes/StrandColourScheme.java
+++ b/src/jalview/schemes/StrandColourScheme.java
@@ -1,35 +1,52 @@
 /*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
-\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 package jalview.schemes;\r
 \r
 import java.awt.*;\r
 \r
-public class StrandColourScheme extends ScoreColourScheme {\r
-\r
-\r
-  public StrandColourScheme() {\r
-    super(ResidueProperties.strand,ResidueProperties.strandmin,ResidueProperties.strandmax);\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class StrandColourScheme\r
+    extends ScoreColourScheme\r
+{\r
+  /**\r
+   * Creates a new StrandColourScheme object.\r
+   */\r
+  public StrandColourScheme()\r
+  {\r
+    super(ResidueProperties.strand, ResidueProperties.strandmin,\r
+          ResidueProperties.strandmax);\r
   }\r
 \r
-  public Color makeColour(float c) {\r
-    return new Color(c,c,(float)1.0-c);\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param c DOCUMENT ME!\r
+   *\r
+   * @return DOCUMENT ME!\r
+   */\r
+  public Color makeColour(float c)\r
+  {\r
+    return new Color(c, c, (float) 1.0 - c);\r
   }\r
 }\r
-\r