new method to get map of sequence positions corresponding to alignment columns

[jalview.git] / src / jalview / schemes / StrandColourScheme.java

diff --git a/src/jalview/schemes/StrandColourScheme.java b/src/jalview/schemes/StrandColourScheme.java
index 9ffed08..ec57d50 100755 (executable)
--- a/src/jalview/schemes/StrandColourScheme.java
+++ b/src/jalview/schemes/StrandColourScheme.java
@@ -1,6 +1,6 @@
-\r
-/* Jalview - a java multiple alignment editor\r
- * Copyright (C) 1998  Michele Clamp\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
  *\r
  * This program is free software; you can redistribute it and/or\r
  * modify it under the terms of the GNU General Public License\r
@@ -14,23 +14,39 @@
  *\r
  * You should have received a copy of the GNU General Public License\r
  * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  */\r
-\r
 package jalview.schemes;\r
 \r
-import java.util.*;\r
 import java.awt.*;\r
 \r
-public class StrandColourScheme extends ScoreColourScheme {\r
-\r
-\r
-  public StrandColourScheme() {\r
-    super(ResidueProperties.strand,ResidueProperties.strandmin,ResidueProperties.strandmax);\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class StrandColourScheme\r
+    extends ScoreColourScheme\r
+{\r
+  /**\r
+   * Creates a new StrandColourScheme object.\r
+   */\r
+  public StrandColourScheme()\r
+  {\r
+    super(ResidueProperties.strand, ResidueProperties.strandmin,\r
+          ResidueProperties.strandmax);\r
   }\r
 \r
-  public Color makeColour(float c) {\r
-    return new Color(c,c,(float)1.0-c);\r
+  /**\r
+   * DOCUMENT ME!\r
+   *\r
+   * @param c DOCUMENT ME!\r
+   *\r
+   * @return DOCUMENT ME!\r
+   */\r
+  public Color makeColour(float c)\r
+  {\r
+    return new Color(c, c, (float) 1.0 - c);\r
   }\r
 }\r
-\r