/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.schemes;
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
import java.awt.Color;
/**
- * DOCUMENT ME!
- *
- * @author $author$
- * @version $Revision$
+ * A graduated colour scheme based on residue turn propensity
*/
public class TurnColourScheme extends ScoreColourScheme
{
+ private static final Color minScoreColour = new Color(0, 255, 255);
+
+ private static final Color maxScoreColour = new Color(255, 0, 0);
+
/**
- * Creates a new TurnColourScheme object.
+ * Constructor
*/
public TurnColourScheme()
{
- super(ResidueProperties.aaIndex, ResidueProperties.turn,
- ResidueProperties.turnmin, ResidueProperties.turnmax);
+ super(JalviewColourScheme.Turn.toString(), ResidueProperties.aaIndex,
+ ResidueProperties.turn, minScoreColour, maxScoreColour);
+ }
+
+ @Override
+ public boolean isPeptideSpecific()
+ {
+ return true;
}
/**
- * DOCUMENT ME!
- *
- * @param c
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
+ * Returns a new instance of this colour scheme with which the given data may
+ * be coloured
*/
- public Color makeColour(float c)
+ @Override
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI coll)
{
- return new Color(c, 1 - c, 1 - c);
+ return new TurnColourScheme();
}
}