JAL-3215 refactored ScoreColourScheme construction for scriptability

[jalview.git] / src / jalview / schemes / TurnColourScheme.java

diff --git a/src/jalview/schemes/TurnColourScheme.java b/src/jalview/schemes/TurnColourScheme.java
index 7ac8bc6..4f354a5 100755 (executable)
--- a/src/jalview/schemes/TurnColourScheme.java
+++ b/src/jalview/schemes/TurnColourScheme.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,35 +20,43 @@
  */
 package jalview.schemes;
 
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
 import java.awt.Color;
 
 /**
- * DOCUMENT ME!
- * 
- * @author $author$
- * @version $Revision$
+ * A graduated colour scheme based on residue turn propensity
  */
 public class TurnColourScheme extends ScoreColourScheme
 {
+  private static final Color minScoreColour = new Color(0, 255, 255);
+
+  private static final Color maxScoreColour = new Color(255, 0, 0);
+
   /**
-   * Creates a new TurnColourScheme object.
+   * Constructor
    */
   public TurnColourScheme()
   {
-    super(ResidueProperties.aaIndex, ResidueProperties.turn,
-            ResidueProperties.turnmin, ResidueProperties.turnmax);
+    super(JalviewColourScheme.Turn.toString(), ResidueProperties.aaIndex,
+            ResidueProperties.turn, minScoreColour, maxScoreColour);
+  }
+
+  @Override
+  public boolean isPeptideSpecific()
+  {
+    return true;
   }
 
   /**
-   * DOCUMENT ME!
-   * 
-   * @param c
-   *          DOCUMENT ME!
-   * 
-   * @return DOCUMENT ME!
+   * Returns a new instance of this colour scheme with which the given data may
+   * be coloured
    */
-  public Color makeColour(float c)
+  @Override
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
   {
-    return new Color(c, 1 - c, 1 - c);
+    return new TurnColourScheme();
   }
 }