/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.schemes;
-import java.awt.*;
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
+import java.awt.Color;
/**
- * DOCUMENT ME!
- *
- * @author $author$
- * @version $Revision$
+ * A graduated colour scheme based on residue turn propensity
*/
public class TurnColourScheme extends ScoreColourScheme
{
+ private static final Color minScoreColour = new Color(0, 255, 255);
+
+ private static final Color maxScoreColour = new Color(255, 0, 0);
+
/**
- * Creates a new TurnColourScheme object.
+ * Constructor
*/
public TurnColourScheme()
{
- super(ResidueProperties.turn, ResidueProperties.turnmin,
- ResidueProperties.turnmax);
+ super(JalviewColourScheme.Turn.toString(), ResidueProperties.aaIndex,
+ ResidueProperties.turn, minScoreColour, maxScoreColour);
+ }
+
+ @Override
+ public boolean isPeptideSpecific()
+ {
+ return true;
}
/**
- * DOCUMENT ME!
- *
- * @param c
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
+ * Returns a new instance of this colour scheme with which the given data may
+ * be coloured
*/
- public Color makeColour(float c)
+ @Override
+ public ColourSchemeI getInstance(AlignViewportI view,
+ AnnotatedCollectionI coll)
{
- return new Color(c, 1 - c, 1 - c);
+ return new TurnColourScheme();
}
}