\r
int colIndex = ResidueProperties.aaIndex[token.charAt(0)];\r
\r
- //AW - LOWER CASE DISABLED IN 2.1.01 bug fix release\r
-\r
if(token.equalsIgnoreCase("lowerCase"))\r
{\r
if (lowerCaseColours == null)\r
\r
if ((threshold == 0) || aboveThreshold(ResidueProperties.aa[index], j))\r
{\r
- //AW - LOWER CASE DISABLED IN 2.1.01 bug fix release\r
if(lowerCaseColours!=null && 'a' <= s.charAt(0) && s.charAt(0) <= 'z')\r
currentColour = lowerCaseColours[index];\r
else\r