JAL-3691 patch toUpper/toLower to use Locale.ROOT for 2.11.2 src

[jalview.git] / src / jalview / structure / StructureCommandsBase.java

diff --git a/src/jalview/structure/StructureCommandsBase.java b/src/jalview/structure/StructureCommandsBase.java
index 57544b7..fdc8d16 100644 (file)
--- a/src/jalview/structure/StructureCommandsBase.java
+++ b/src/jalview/structure/StructureCommandsBase.java
@@ -24,7 +24,7 @@ public abstract class StructureCommandsBase implements StructureCommandsI
    * 
    * @return
    */
-  protected static String getCommandSeparator()
+  protected String getCommandSeparator()
   {
     return CMD_SEPARATOR;
   }
@@ -141,7 +141,7 @@ public abstract class StructureCommandsBase implements StructureCommandsI
   protected StructureCommandI getColourCommand(AtomSpecModel atomSpecModel,
           Color colour)
   {
-    String atomSpec = getAtomSpec(atomSpecModel, false);
+    String atomSpec = getAtomSpec(atomSpecModel, AtomSpecType.RESIDUE_ONLY);
     return colourResidues(atomSpec, colour);
   }