JAL-3855 suppress NPE when trying to retrieve SIFTS mappings for Alphafold PDB IDs

[jalview.git] / src / jalview / structure / StructureCommandsI.java

diff --git a/src/jalview/structure/StructureCommandsI.java b/src/jalview/structure/StructureCommandsI.java
index 871d84b..91e0494 100644 (file)
--- a/src/jalview/structure/StructureCommandsI.java
+++ b/src/jalview/structure/StructureCommandsI.java
@@ -4,9 +4,6 @@ import java.awt.Color;
 import java.util.List;
 import java.util.Map;
 
-import jalview.api.AlignmentViewPanel;
-import jalview.datamodel.SequenceI;
-
 /**
  * Methods that generate commands that can be sent to a molecular structure
  * viewer program (e.g. Jmol, Chimera, ChimeraX)
@@ -160,4 +157,63 @@ public interface StructureCommandsI
    */
   List<StructureCommandI> setAttributes(
           Map<String, Map<Object, AtomSpecModel>> featureValues);
+
+  /**
+   * Returns command to open a saved structure viewer session file, or null if
+   * not supported
+   * 
+   * @param filepath
+   * @return
+   */
+  StructureCommandI openSession(String filepath);
+
+  /**
+   * Returns a command to ask the viewer to close down
+   * 
+   * @return
+   */
+  StructureCommandI closeViewer();
+
+  /**
+   * Returns one or more commands to ask the viewer to notify model or selection
+   * changes to the given uri. Returns null if this is not supported by the
+   * structure viewer.
+   * 
+   * @param uri
+   * @return
+   */
+  List<StructureCommandI> startNotifications(String uri);
+
+  /**
+   * Returns one or more commands to ask the viewer to stop notifying model or
+   * selection changes. Returns null if this is not supported by the structure
+   * viewer.
+   * 
+   * @return
+   */
+  List<StructureCommandI> stopNotifications();
+
+  /**
+   * Returns a command to ask the viewer for its current residue selection, or
+   * null if no such command is supported
+   * 
+   * @return
+   */
+  StructureCommandI getSelectedResidues();
+
+  /**
+   * Returns a command to list the unique names of residue attributes, or null
+   * if no such command is supported
+   * 
+   * @return
+   */
+  StructureCommandI listResidueAttributes();
+
+  /**
+   * Returns a command to list residues with an attribute of the given name,
+   * with attribute value, or null if no such command is supported
+   * 
+   * @return
+   */
+  StructureCommandI getResidueAttributes(String attName);
 }