*/
String showChains(List<String> toShow);
+ /**
+ * Returns zero, one or more commands to set attributes on mapped residues in
+ * the structure viewer for any features present and displayed in Jalview
+ *
+ * @param ssm
+ * @param files
+ * @param sequence
+ * @param avp
+ * @return
+ */
+ String[] setAttributesForFeatures(StructureSelectionManager ssm,
+ String[] files, SequenceI[][] sequence, AlignmentViewPanel avp);
+
}