/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*/
package jalview.structure;
+import jalview.datamodel.SequenceI;
+
+import java.util.List;
+
public interface StructureListener
{
/**
- *
- * @return list of structure files (unique IDs/filenames) that this listener
- * handles messages for, or null if generic listener (only used by
- * removeListener method)
+ * Returns a list of structure files (unique IDs/filenames) that this listener
+ * handles messages for, or null if generic listener (only used by
+ * removeListener method)
*/
- public String[] getPdbFile();
+ public String[] getStructureFiles();
/**
- * NOT A LISTENER METHOD! called by structure viewer when the given
- * atom/structure has been moused over. Typically, implementors call
- * StructureSelectionManager.mouseOverStructure
+ * Called by StructureSelectionManager to inform viewer to highlight given
+ * atom positions
*
- * @param atomIndex
- * @param strInfo
+ * @param atoms
*/
- public void mouseOverStructure(int atomIndex, String strInfo);
+ public void highlightAtoms(List<AtomSpec> atoms);
/**
- * called by StructureSelectionManager to inform viewer to highlight given
- * atomspec
- *
- * @param atomIndex
- * @param pdbResNum
- * @param chain
- * @param pdbId
- */
- public void highlightAtom(int atomIndex, int pdbResNum, String chain,
- String pdbId);
-
- /**
- * called by StructureSelectionManager when the colours of a sequence
+ * Called by StructureSelectionManager when the colours of a sequence
* associated with a structure have changed.
*
* @param source
public void updateColours(Object source);
/**
- * called by Jalview to get the colour for the given atomspec
- *
- * @param atomIndex
- * @param pdbResNum
- * @param chain
- * @param pdbId
- * @return
- */
- public java.awt.Color getColour(int atomIndex, int pdbResNum,
- String chain, String pdbId);
-
- /**
- * called by structureSelectionManager to instruct implementor to release any
+ * Called by structureSelectionManager to instruct implementor to release any
* direct references it may hold to the given object (typically, these are
* Jalview alignment panels).
*
* @param svl
*/
public void releaseReferences(Object svl);
+
+ /**
+ * Answers true if this listener is interested in the given sequence
+ *
+ * @param seq
+ * @return
+ */
+ public boolean isListeningFor(SequenceI seq);
}