/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
{
/**
*
- * @return list of structure files (unique IDs/filenames) that this listener handles messages for, or null if generic listener (only used by removeListener method)
+ * @return list of structure files (unique IDs/filenames) that this listener
+ * handles messages for, or null if generic listener (only used by
+ * removeListener method)
*/
public String[] getPdbFile();
/**
- * NOT A LISTENER METHOD!
- * called by structure viewer when the given atom/structure has been moused over. Typically, implementors call StructureSelectionManager.mouseOverStructure
+ * NOT A LISTENER METHOD! called by structure viewer when the given
+ * atom/structure has been moused over. Typically, implementors call
+ * StructureSelectionManager.mouseOverStructure
+ *
* @param atomIndex
* @param strInfo
*/
public void mouseOverStructure(int atomIndex, String strInfo);
/**
- * called by StructureSelectionManager to inform viewer to highlight given atomspec
+ * called by StructureSelectionManager to inform viewer to highlight given
+ * atomspec
+ *
* @param atomIndex
* @param pdbResNum
* @param chain
String pdbId);
/**
- * called by StructureSelectionManager when the colours of a sequence associated with a structure have changed.
- * @param source (untyped) usually an alignPanel
+ * called by StructureSelectionManager when the colours of a sequence
+ * associated with a structure have changed.
+ *
+ * @param source
+ * (untyped) usually an alignPanel
*/
public void updateColours(Object source);
/**
* called by Jalview to get the colour for the given atomspec
+ *
* @param atomIndex
* @param pdbResNum
* @param chain
*/
public java.awt.Color getColour(int atomIndex, int pdbResNum,
String chain, String pdbId);
+
+ /**
+ * called by structureSelectionManager to instruct implementor to release any
+ * direct references it may hold to the given object (typically, these are
+ * Jalview alignment panels).
+ *
+ * @param svl
+ */
+ public void releaseReferences(Object svl);
}