AlignSeq as = AlignSeq.doGlobalNWAlignment(seq, chain.sequence,
type);
// TODO: JAL-4366 determinine of a crummy alignment but exact match should make this chain the one to be mapped to a 3di sequence
- if (as.s1str.length() == 4 + as.s2str.length())
+ if (as.s1str.length() == as.s2str.length())
{
idLengthChain = chain;
}