file format enum wip changes

[jalview.git] / src / jalview / structures / models / AAStructureBindingModel.java

diff --git a/src/jalview/structures/models/AAStructureBindingModel.java b/src/jalview/structures/models/AAStructureBindingModel.java
index dc42315..70fe609 100644 (file)
--- a/src/jalview/structures/models/AAStructureBindingModel.java
+++ b/src/jalview/structures/models/AAStructureBindingModel.java
@@ -24,6 +24,7 @@ import jalview.api.StructureSelectionManagerProvider;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
 import jalview.structure.AtomSpec;
 import jalview.structure.StructureListener;
 import jalview.structure.StructureMapping;
@@ -66,7 +67,7 @@ public abstract class AAStructureBindingModel extends
   /*
    * datasource protocol for access to PDBEntrylatest
    */
-  String protocol = null;
+  DataSourceType protocol = null;
 
   protected boolean colourBySequence = true;
 
@@ -123,18 +124,18 @@ public abstract class AAStructureBindingModel extends
    * @param pdbentry
    * @param sequenceIs
    * @param chains
-   * @param protocol
+   * @param protocol2
    */
   public AAStructureBindingModel(StructureSelectionManager ssm,
           PDBEntry[] pdbentry, SequenceI[][] sequenceIs, String[][] chains,
-          String protocol)
+          DataSourceType protocol2)
   {
     this.ssm = ssm;
     this.sequence = sequenceIs;
     this.nucleotide = Comparison.isNucleotide(sequenceIs);
     this.chains = chains;
     this.pdbEntry = pdbentry;
-    this.protocol = protocol;
+    this.protocol = protocol2;
     if (chains == null)
     {
       this.chains = new String[pdbentry.length][];
@@ -198,7 +199,7 @@ public abstract class AAStructureBindingModel extends
     return chains;
   }
 
-  public String getProtocol()
+  public DataSourceType getProtocol()
   {
     return protocol;
   }