BitSet matched, SuperposeData[] structures)
{
int refStructure = -1;
- String[] files = getPdbFile();
+ String[] files = getStructureFiles();
if (files == null)
{
return -1;
* move on to next pdb file (ignore sequences for other chains
* for the same structure)
*/
- s = seqCountForPdbFile;
- break;
+ // s = seqCountForPdbFile;
+ // break;
}
}
}
{
return;
}
- String[] files = getPdbFile();
+ String[] files = getStructureFiles();
SequenceRenderer sr = getSequenceRenderer(alignmentv);
return fileLoadingError != null && fileLoadingError.length() > 0;
}
- protected abstract jalview.api.FeatureRenderer getFeatureRenderer(
+ public abstract jalview.api.FeatureRenderer getFeatureRenderer(
AlignmentViewPanel alignment);
}