various case sensitivity bugs fixed in residue comparison functions.

[jalview.git] / src / jalview / util / Comparison.java

diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java
index 9b61798..9a86696 100755 (executable)
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -138,7 +138,7 @@ public class Comparison
 \r
             if (i < s1.getSequence().length())\r
             {\r
-                chr1 = s1.getSequence().charAt(i);\r
+                chr1 = Character.toUpperCase(s1.getSequence().charAt(i));\r
             }\r
             else\r
             {\r
@@ -147,7 +147,7 @@ public class Comparison
 \r
             if (i < s2.getSequence().length())\r
             {\r
-                chr2 = s2.getSequence().charAt(i);\r
+                chr2 = Character.toUpperCase(s2.getSequence().charAt(i));\r
             }\r
             else\r
             {\r
@@ -200,7 +200,7 @@ public class Comparison
 \r
             if (i < s1.getSequence().length())\r
             {\r
-                chr1 = s1.getSequence().charAt(i);\r
+                chr1 = Character.toUpperCase(s1.getSequence().charAt(i));\r
             }\r
             else\r
             {\r
@@ -209,7 +209,7 @@ public class Comparison
 \r
             if (i < s2.getSequence().length())\r
             {\r
-                chr2 = s2.getSequence().charAt(i);\r
+                chr2 = Character.toUpperCase(s2.getSequence().charAt(i));\r
             }\r
             else\r
             {\r