JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / util / Comparison.java

diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java
index 835a1b4..c491be4 100644 (file)
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,11 +20,11 @@
  */
 package jalview.util;
 
+import jalview.datamodel.SequenceI;
+
 import java.util.ArrayList;
 import java.util.List;
 
-import jalview.datamodel.SequenceI;
-
 /**
  * Assorted methods for analysing or comparing sequences.
  */
@@ -40,8 +40,8 @@ public class Comparison
 
   private static final char GAP_DASH = '-';
 
-  public static final String GapChars = new String(new char[]
-  { GAP_SPACE, GAP_DOT, GAP_DASH });
+  public static final String GapChars = new String(new char[] { GAP_SPACE,
+      GAP_DOT, GAP_DASH });
 
   /**
    * DOCUMENT ME!
@@ -320,11 +320,13 @@ public class Comparison
     List<SequenceI> flattened = new ArrayList<SequenceI>();
     for (SequenceI[] ss : seqs)
     {
-      for (SequenceI s : ss) {
-      flattened.add(s);
+      for (SequenceI s : ss)
+      {
+        flattened.add(s);
       }
     }
-    final SequenceI[] oneDArray = flattened.toArray(new SequenceI[flattened.size()]);
+    final SequenceI[] oneDArray = flattened.toArray(new SequenceI[flattened
+            .size()]);
     return isNucleotide(oneDArray);
   }
 }